OpenMD 3.0
Molecular Dynamics in the Open
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ShapeAtomType.hpp
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32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file ShapeAtomType.hpp
47 * @author Dan Gezelter
48 * @date 10/18/2004
49 * @version 1.0
50 */
51
52#ifndef TYPES_SHAPEATOMTYPE_HPP
53#define TYPES_SHAPEATOMTYPE_HPP
54
55#include <vector>
56
59#include "utils/GenericData.hpp"
60#include "utils/simError.h"
61
62namespace OpenMD {
64 public:
65 ShapeAtomType() {}
67
68 std::vector<RealSphericalHarmonic*> getContactFuncs(void) {
69 return contactFuncs;
70 }
71 std::vector<RealSphericalHarmonic*> getRangeFuncs(void) {
72 return rangeFuncs;
73 }
74 std::vector<RealSphericalHarmonic*> getStrengthFuncs(void) {
75 return strengthFuncs;
76 }
77
78 void setContactFuncs(std::vector<RealSphericalHarmonic*> cf) {
79 contactFuncs = cf;
80 }
81 void setRangeFuncs(std::vector<RealSphericalHarmonic*> rf) {
82 rangeFuncs = rf;
83 }
84 void setStrengthFuncs(std::vector<RealSphericalHarmonic*> sf) {
85 strengthFuncs = sf;
86 }
87
88 /**
89 * Gets the value of the contact function at a particular orientation
90 * @param costheta
91 * @param phi
92 */
93 RealType getContactValueAt(RealType costheta, RealType phi);
94
95 /**
96 * Gets the value of the range function at a particular orientation
97 * @param costheta
98 * @param phi
99 */
100 RealType getRangeValueAt(RealType costheta, RealType phi);
101
102 /**
103 * Gets the value of the strength function at a particular orientation
104 * @param costheta
105 * @param phi
106 */
107 RealType getStrengthValueAt(RealType costheta, RealType phi);
108
109 private:
110 std::vector<RealSphericalHarmonic*> contactFuncs; // The contact functions
111 std::vector<RealSphericalHarmonic*> rangeFuncs; // The range functions
112 std::vector<RealSphericalHarmonic*>
113 strengthFuncs; // The strength functions
114 };
115
117} // namespace OpenMD
118
119#endif
RealType getRangeValueAt(RealType costheta, RealType phi)
Gets the value of the range function at a particular orientation.
RealType getContactValueAt(RealType costheta, RealType phi)
Gets the value of the contact function at a particular orientation.
RealType getStrengthValueAt(RealType costheta, RealType phi)
Gets the value of the strength function at a particular orientation.
SimpleTypeData class is a POD repository class.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.