OpenMD 3.0
Molecular Dynamics in the Open
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ShortRangeInteraction.cpp
1/*
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#include "primitives/ShortRangeInteraction.hpp"
46
47#include <memory>
48
49namespace OpenMD {
50
51 ShortRangeInteraction::ShortRangeInteraction() :
52 globalIndex_(-1), localIndex_(-1) {}
53
54 ShortRangeInteraction::~ShortRangeInteraction() {}
55
56 RealType ShortRangeInteraction::getValue() {
57 int id = snapshotMan_->getCurrentSnapshot()->getID();
58 return getValue(id);
59 }
60
61 RealType ShortRangeInteraction::getPrevValue() {
62 int id = snapshotMan_->getPrevSnapshot()->getID();
63 return getValue(id);
64 }
65
66 void ShortRangeInteraction::addProperty(
67 std::shared_ptr<GenericData> genData) {
68 properties_.addProperty(genData);
69 }
70
71 void ShortRangeInteraction::removeProperty(const std::string& propName) {
72 properties_.removeProperty(propName);
73 }
74
75 std::vector<std::string> ShortRangeInteraction::getPropertyNames() {
76 return properties_.getPropertyNames();
77 }
78
79 std::vector<std::shared_ptr<GenericData>>
80 ShortRangeInteraction::getProperties() {
81 return properties_.getProperties();
82 }
83
84 std::shared_ptr<GenericData> ShortRangeInteraction::getPropertyByName(
85 const std::string& propName) {
86 return properties_.getPropertyByName(propName);
87 }
88} // namespace OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.