OpenMD 3.0
Molecular Dynamics in the Open
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Velocitizer.hpp
1/*
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef BRAINS_VELOCITIZER_HPP
46#define BRAINS_VELOCITIZER_HPP
47
48#include "brains/SimInfo.hpp"
49#include "brains/Thermo.hpp"
50#include "io/Globals.hpp"
51#include "utils/RandNumGen.hpp"
52
53namespace OpenMD {
54
55 //! Velocity-modifying routines.
56 /*
57 Provides functions that re-sample or re-scale the velocities.
58 These are particularly useful for setting initial configurations
59 to a desired temperature or re-scaling velocities to match a
60 desired energy.
61 */
63 public:
64 Velocitizer(SimInfo* info);
65 virtual ~Velocitizer() = default;
66
67 /** @brief Resamples velocities and angular momenta
68 * Resamples velocities and angular momenta from a Maxwell-Boltzmann
69 * distribution.
70 * @param t : Temperature of the new distribution.
71 */
72 void randomize(RealType ct);
73
74 /** @brief Resamples charge velocities
75 * Resamples charge velocities from a Maxwell-Boltzmann
76 * distribution.
77 * @param ct : Charge temperature of the new distribution.
78 */
79 void randomizeChargeVelocity(RealType ct);
80
81 /** @brief Scales velocities and angular momenta by a scaling factor
82 * Rescales velocity (and angular momenta) by a scaling factor.
83 * @param lambda : Scaling factor (must be >= 0)
84 */
85 void scale(RealType lambda);
86
87 /** @brief Removes Center of Mass Drift Velocity
88 * Removes the center of mass drift velocity (required for accurate
89 * calculations of diffusion).
90 */
91 void removeComDrift();
92
93 /** @brief Removes Center of Mass Angular momentum
94 * Removes the center of mass angular momentum (particularly useful in
95 * non-periodic simulations).
96 */
97 void removeAngularDrift();
98
99 private:
100 SimInfo* info_ {nullptr};
101 Thermo thermo_;
102 Globals* globals_;
103 Utils::RandNumGenPtr randNumGen_ {nullptr};
104 };
105} // namespace OpenMD
106
107#endif // BRAINS_VELOCITIZER_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
Velocity-modifying routines.
void randomize(RealType ct)
Resamples velocities and angular momenta Resamples velocities and angular momenta from a Maxwell-Bolt...
void randomizeChargeVelocity(RealType ct)
Resamples charge velocities Resamples charge velocities from a Maxwell-Boltzmann distribution.
void removeComDrift()
Removes Center of Mass Drift Velocity Removes the center of mass drift velocity (required for accurat...
void scale(RealType lambda)
Scales velocities and angular momenta by a scaling factor Rescales velocity (and angular momenta) by ...
void removeAngularDrift()
Removes Center of Mass Angular momentum Removes the center of mass angular momentum (particularly use...
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.