| addForceToAtomColumn(int atom2, Vector3d fg) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| addForceToAtomRow(int atom1, Vector3d fg) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| addToHeatFlux(Vector3d hf) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| atomStorageLayout_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| atypesLocal (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| buildNeighborList(vector< int > &neighborList, vector< int > &point, vector< Vector3d > &savedPositions) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| cellList_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| cellOffsets_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| cgColToGlobal (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | |
| cgRowToGlobal (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | |
| checkNeighborList(vector< Vector3d > savedPositions) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| collectData() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| collectIntermediateData() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| collectSelfData() | OpenMD::ForceMatrixDecomposition | virtual |
| cutoffGroupStorageLayout_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| distributeData() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| distributeInitialData() | OpenMD::ForceMatrixDecomposition | virtual |
| distributeIntermediateData() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| excludeAtomPair(int atom1, int atom2) | OpenMD::ForceMatrixDecomposition | virtual |
| excludedPot (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| excludedSelfPot (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| excludesForAtom (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| ff_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| fillInteractionData(InteractionData &idat, int atom1, int atom2, bool newAtom1=true) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| fillPreForceData(SelfData &sdat, int atom) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| fillSelfData(SelfData &sdat, int atom) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| ForceDecomposition(SimInfo *info, InteractionManager *iMan) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | |
| ForceMatrixDecomposition(SimInfo *info, InteractionManager *iMan) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | |
| getAtomsInGroupColumn(int cg2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getAtomsInGroupRow(int cg1) | OpenMD::ForceMatrixDecomposition | virtual |
| getAtomToGroupVectorColumn(int atom2, int cg2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getAtomToGroupVectorRow(int atom1, int cg1) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getAtomVelocityColumn(int atom2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getExcludedPotential() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| getExcludedSelfPotential() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| getExcludesForAtom(int atom1) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getGlobalID(int atom1) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getGlobalIDCol(int atom1) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getGlobalIDRow(int atom1) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getGroupVelocityColumn(int cg2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getInteratomicVector(int atom1, int atom2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getIntergroupVector(int cg1, int cg2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getMassFactorColumn(int atom2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getMassFactorRow(int atom1) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getNAtomsInRow() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| getPairwisePotential() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| getSelectedPotential() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| getSelectedSelfPotential() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| getSelfPotential() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| getTopologicalDistance(int atom1, int atom2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| groupList_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| idents (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| info_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| interactionMan_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| massFactors (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| nCells_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| needVelocities_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| pairwisePot (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| rCut_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| regions (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| rigidBodyStorageLayout_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| rList_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| rListSq_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| selectedPot (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| selectedSelfPot (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| selfPot (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| setCutoffRadius(RealType rCut) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | |
| setHeatFlux(Vector3d hf) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| setSnapshot(Snapshot *snap) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| skinThickness_ | OpenMD::ForceDecomposition | protected |
| skipAtomPair(int atom1, int atom2, int cg1, int cg2) | OpenMD::ForceMatrixDecomposition | virtual |
| sman_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| snap_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| topoDist (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| toposForAtom | OpenMD::ForceDecomposition | protected |
| unpackInteractionData(InteractionData &idat, int atom1, int atom2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| unpackPreForceData(SelfData &sdat, int atom) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| unpackPrePairData(InteractionData &idat, int atom1, int atom2) (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| unpackSelfData(SelfData &sdat, int atom) (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | virtual |
| usePeriodicBoundaryConditions_ (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | protected |
| zeroWorkArrays() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | virtual |
| ~ForceDecomposition() (defined in OpenMD::ForceDecomposition) | OpenMD::ForceDecomposition | inlinevirtual |
| ~ForceMatrixDecomposition() (defined in OpenMD::ForceMatrixDecomposition) | OpenMD::ForceMatrixDecomposition | |
1.10.0