[Openmd-users] Nearest neighbour treatment
Dan Gezelter
gezelter at nd.edu
Mon Aug 2 10:39:46 EDT 2010
Brett,
There are parameters you can set up in the top of a forcefield file to control the scaling of non-bonded interactions between atoms that are involved in explicit short-range interactions.
vdW-12-scale
vdW-13-scale
vdW-14-scale
electrostatic-12-scale
electrostatic-13-scale
electrostatic-14-scale
All of these default to zero if your forcefield doesn't set them, but if you look at the top of the Amber.frc file in the forceFields directory, you'll see a force field where the 14 interactions have both been set to non-zero values:
begin Options
Name "Amber"
vdW-14-scale 0.5
electrostatic-14-scale 0.83333333333333333
end Options
Glad to hear that OpenMD is scaling well!
Best regards,
--Dan
On Aug 2, 2010, at 10:19 AM, Brett Donovan wrote:
> Hi Dan
>
> Just another question about nearest neighbour treatment, given four
> atoms pair-wise bonded: 0,1,2,3, what non-bonded interactions are
> performed between these atoms?
>
> Thanks
>
> Brett
>
> PS. BTW people are very impressed with the scaling abilities of OMD!
***********************************************
J. Daniel Gezelter
Associate Professor of Chemistry
Director of Graduate Admissions
Department of Chemistry and Biochemistry
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University of Notre Dame
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phone: +1 (574) 631-7595
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e-mail: gezelter at nd.edu
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