[Openmd-users] (no subject)

[Baker D.J.]

Hello,

We are new to OpenMD, and recently we installed Openmd 1.1 on our linux cluster at the request of one of our users. We don't, at this stage, have many details of what he's doing, however his job aborts with the trace back as shown below. We build Openmd 1.1 with the Intel compilers v11.1 and openmpi v1.3.3 on a rhel 5.3 machine. Do anyone have any advice for us please? 

Should we, for example, preferably build with the gnu compilers, and/or another MPI library? Alternatively should we rebuild OpenMP with debugger support?

Best regards -- David Baker.

terminate called after throwing an instance of 'std::bad_cast'
  what():  St8bad_cast
[red0576:07809] *** Process received signal ***
[red0576:07809] Signal: Aborted (6)
[red0576:07809] Signal code:  (-6)
[red0576:07809] [ 0] /lib64/libpthread.so.0 [0x2b13b79684c0]
[red0576:07809] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x2b13b88e5215]
[red0576:07809] [ 2] /lib64/libc.so.6(abort+0x110) [0x2b13b88e6cc0]
[red0576:07809] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x114) [0x2b13b8465c44]
[red0576:07809] [ 4] /usr/lib64/libstdc++.so.6 [0x2b13b8463db6]
[red0576:07809] [ 5] /usr/lib64/libstdc++.so.6 [0x2b13b8463de3]
[red0576:07809] [ 6] /usr/lib64/libstdc++.so.6 [0x2b13b8463eca]
[red0576:07809] [ 7] /usr/lib64/libstdc++.so.6 [0x2b13b8400142]
[red0576:07809] [ 8] /usr/lib64/libstdc++.so.6 [0x2b13b8415e98]
[red0576:07809] [ 9] /usr/lib64/libstdc++.so.6(_ZSt4endlIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_+0x15) [0x2b13b8437005]
[red0576:07809] [10] openmd_MPI(_ZN6OpenMD10StatWriter9writeStatERKNS_5StatsE+0x139) [0x60c8e9]
[red0576:07809] [11] openmd_MPI(_ZN6OpenMD24VelocityVerletIntegrator8postStepEv+0x15c) [0x59e69c]
[red0576:07809] [12] openmd_MPI(_ZN6OpenMD24VelocityVerletIntegrator11doIntegrateEv+0x43) [0x59e4a3]
[red0576:07809] [13] openmd_MPI(main+0xa30) [0x474fd0]
[red0576:07809] [14] /lib64/libc.so.6(__libc_start_main+0xf4) [0x2b13b88d2974]
[red0576:07809] [15] openmd_MPI(_ZNSt8ios_base4InitD1Ev+0x49) [0x4744e9]
[red0576:07809] *** End of error message ***