OpenMD 3.1
Molecular Dynamics in the Open
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BCCLattice.cpp
1/*
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#include "lattice/BCCLattice.hpp"
46
47namespace OpenMD {
48
49 BCCLattice::BCCLattice() : CubicLattice() {
50 nCellSites = 2;
51 cellSitesPos.resize(nCellSites);
52 cellSitesOrt.resize(nCellSites);
53 update();
54 }
55
56 void BCCLattice::update() {
57 RealType cellLenOver2;
58 RealType oneOverRoot3;
59
60 cellLenOver2 = 0.5 * latticeParam;
61 oneOverRoot3 = 1.0 / sqrt(3.0);
62
63 // Molecule 1
64 cellSitesPos[0][0] = 0.0;
65 cellSitesPos[0][1] = 0.0;
66 cellSitesPos[0][2] = 0.0;
67
68 cellSitesOrt[0][0] = oneOverRoot3;
69 cellSitesOrt[0][1] = oneOverRoot3;
70 cellSitesOrt[0][2] = oneOverRoot3;
71
72 // Molecule 2
73 cellSitesPos[1][0] = cellLenOver2;
74 cellSitesPos[1][1] = cellLenOver2;
75 cellSitesPos[1][2] = cellLenOver2;
76
77 cellSitesOrt[1][0] = -oneOverRoot3;
78 cellSitesOrt[1][1] = -oneOverRoot3;
79 cellSitesOrt[1][2] = -oneOverRoot3;
80 }
81
82} // namespace OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.