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Molecular Dynamics in the Open
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ConstraintPair.hpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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#ifndef CONSTRAINTS_CONTRAINTPAIR_HPP
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#define CONSTRAINTS_CONTRAINTPAIR_HPP
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#include "constraints/ConstraintElem.hpp"
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#include "
primitives/StuntDouble.hpp
"
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namespace
OpenMD
{
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/**
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* @class ConstraintPair
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* @todo document
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*/
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class
ConstraintPair {
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public
:
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ConstraintPair(
ConstraintElem
* elem1,
ConstraintElem
* elem2, RealType len,
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bool
printForce) :
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consElem1_(elem1),
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consElem2_(elem2), dist2(len * len), printForce_(printForce) {}
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~ConstraintPair() {
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delete
consElem1_;
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delete
consElem2_;
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}
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/** Return the first constraint elemet */
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ConstraintElem
*
getConsElem1
() {
return
consElem1_; }
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/** Retunr the second constraint element */
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ConstraintElem
*
getConsElem2
() {
return
consElem2_; }
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bool
isMoved() {
return
consElem1_->getMoved() || consElem2_->getMoved(); }
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RealType getConsDistSquare() {
return
dist2; }
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void
setConstraintForce(RealType frc) { force_ = frc; }
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void
addConstraintForce(RealType frc) { force_ += frc; }
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void
resetConstraintForce() { force_ = 0.0; }
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RealType getConstraintForce() {
return
force_; }
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bool
getPrintForce() {
return
printForce_; }
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private
:
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ConstraintElem* consElem1_;
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ConstraintElem* consElem2_;
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RealType dist2;
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RealType force_ {};
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bool
printForce_;
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};
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}
// namespace OpenMD
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#endif
StuntDouble.hpp
OpenMD::ConstraintElem
An adapter class of StuntDouble which is used at constraint algorithm.
Definition
ConstraintElem.hpp:64
OpenMD::ConstraintPair::getConsElem1
ConstraintElem * getConsElem1()
Return the first constraint elemet.
Definition
ConstraintPair.hpp:72
OpenMD::ConstraintPair::getConsElem2
ConstraintElem * getConsElem2()
Retunr the second constraint element.
Definition
ConstraintPair.hpp:75
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
constraints
ConstraintPair.hpp
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