OpenMD 3.0
Molecular Dynamics in the Open
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CosineSeriesBendType.hpp
1/*
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35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef TYPES_COSINESERIESBENDTYPE_HPP
46#define TYPES_COSINESERIESBENDTYPE_HPP
47
48#include "types/BendType.hpp"
49
50namespace OpenMD {
51 /**
52 * @class CosineSeriesBendType
53 *
54 * A bend used primarily in UFF that utilizes a Fourier series in
55 * terms of the cosine of the bend angle:
56 *
57 * \f[ Vbend = k \left[ C_0 + C_1 \cos(\theta) + C_2 \cos(2 \theta) \right]
58 * \f]
59 */
61 public:
62 CosineSeriesBendType(RealType theta, RealType k) : BendType(theta), k_(k) {
63 RealType st = sin(theta);
64 RealType ct = cos(theta);
65 c2_ = 1.0 / (4.0 * st * st);
66 c1_ = -4.0 * c2_ * ct;
67 c0_ = c2_ * (2.0 * ct * ct + 1.0);
68 }
69
70 void setForceConstant(RealType k) { k_ = k; }
71
72 RealType getForceConstant() { return k_; }
73
74 void calcForce(RealType theta, RealType& V, RealType& dVdtheta) {
75 RealType ct = cos(theta);
76 RealType st = sin(theta);
77
78 // use cos 2t = (2 cos^2 - 1)
79 V = k_ * (c0_ + c1_ * ct + c2_ * (2.0 * ct * ct - 1.0));
80 dVdtheta = -k_ * (c1_ * st + 2.0 * c2_ * sin(2.0 * theta));
81 }
82
83 private:
84 RealType k_;
85 RealType c0_;
86 RealType c1_;
87 RealType c2_;
88 };
89} // namespace OpenMD
90
91#endif // TYPES_COSINESERIESBENDTYPE_HPP
A bend used primarily in UFF that utilizes a Fourier series in terms of the cosine of the bend angle:
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.