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Molecular Dynamics in the Open
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FluctuatingChargeForces.hpp
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/*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the appropriate papers when you publish your
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* work. Good starting points are:
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*
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* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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*/
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#ifndef INTEGRATORS_FLUCTUATINGCHARGEFORCES_HPP
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#define INTEGRATORS_FLUCTUATINGCHARGEFORCES_HPP
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#include "
brains/SimInfo.hpp
"
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#include "
math/Polynomial.hpp
"
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using namespace
std;
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namespace
OpenMD
{
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struct
FluctuatingChargeAtomData
{
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RealType hardness;
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RealType electronegativity;
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int
slaterN;
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RealType slaterZeta;
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RealType curvature;
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DoublePolynomial
vself_;
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};
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class
FluctuatingChargeForces
{
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public
:
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FluctuatingChargeForces
(
SimInfo
* info);
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void
setForceField(
ForceField
* ff) { forceField_ = ff; };
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void
setSimulatedAtomTypes(AtomTypeSet& simtypes) { simTypes_ = simtypes; };
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void
getSelfInteraction(
int
atid, RealType charge, RealType& potential,
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RealType& force);
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void
addType(
AtomType
* atomType);
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protected
:
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void
initialize();
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SimInfo
* info_ {
nullptr
};
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ForceField
* forceField_;
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AtomTypeSet simTypes_;
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FluctuatingChargeAtomData
data;
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set<int>
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FQtypes
;
/**< The set of AtomType idents that are fluctuating types */
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vector<int>
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FQtids
;
/**< The mapping from AtomType ident -> fluctuating ident */
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vector<FluctuatingChargeAtomData>
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FQMap
;
/**< data about fluctuating types */
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bool
initialized_;
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};
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}
// namespace OpenMD
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#endif
Polynomial.hpp
SimInfo.hpp
OpenMD::AtomType
AtomType is what OpenMD looks to for unchanging data about an atom.
Definition
AtomType.hpp:66
OpenMD::FluctuatingChargeForces
Definition
FluctuatingChargeForces.hpp:63
OpenMD::FluctuatingChargeForces::FQMap
vector< FluctuatingChargeAtomData > FQMap
data about fluctuating types
Definition
FluctuatingChargeForces.hpp:85
OpenMD::FluctuatingChargeForces::FQtypes
set< int > FQtypes
The set of AtomType idents that are fluctuating types.
Definition
FluctuatingChargeForces.hpp:81
OpenMD::FluctuatingChargeForces::FQtids
vector< int > FQtids
The mapping from AtomType ident -> fluctuating ident.
Definition
FluctuatingChargeForces.hpp:83
OpenMD::ForceField
Definition
ForceField.hpp:74
OpenMD::Polynomial< RealType >
OpenMD::SimInfo
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition
SimInfo.hpp:93
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:60
OpenMD::FluctuatingChargeAtomData
Definition
FluctuatingChargeForces.hpp:54
flucq
FluctuatingChargeForces.hpp
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