OpenMD 3.2
Molecular Dynamics in the Open
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FluctuatingChargeParameters.cpp
1/*
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48#include "flucq/FluctuatingChargeParameters.hpp"
49
50#include <cstdlib>
51#include <cstring>
52#include <iostream>
53
54namespace OpenMD {
55 FluctuatingChargeParameters::FluctuatingChargeParameters() {
56 DefineOptionalParameterWithDefaultValue(Propagator, "propagator", "Damped");
57 DefineOptionalParameterWithDefaultValue(DoInitialOptimization,
58 "doInitialOptimization", true);
59 DefineOptionalParameterWithDefaultValue(ChargeOptimizationMethod, "method",
60 "CG");
61 DefineOptionalParameterWithDefaultValue(Friction, "friction", 1600.0);
62 DefineOptionalParameterWithDefaultValue(Tolerance, "tolerance", 1.0e-5);
63 DefineOptionalParameterWithDefaultValue(MaxIterations, "maxIterations",
64 100);
65 DefineOptionalParameterWithDefaultValue(TargetTemp, "targetTemp", 1.0e-6);
66 DefineOptionalParameterWithDefaultValue(TauThermostat, "tauThermostat",
67 10.0);
68 DefineOptionalParameterWithDefaultValue(DragCoefficient, "dragCoefficient",
69 0.01);
70 DefineOptionalParameterWithDefaultValue(ConstrainRegions,
71 "constrainRegions", false);
72 DefineOptionalParameterWithDefaultValue(InitialStepSize, "initialStepSize",
73 0.1);
74 }
75
76 void FluctuatingChargeParameters::validate() {
77 CheckParameter(Propagator,
78 isEqualIgnoreCase("Damped") || isEqualIgnoreCase("NVT") ||
79 isEqualIgnoreCase("Langevin") ||
80 isEqualIgnoreCase("Minimizer") ||
81 isEqualIgnoreCase("NVE") || isEqualIgnoreCase("Exact"));
82 CheckParameter(Friction, isNonNegative());
83 CheckParameter(Tolerance, isPositive());
84 CheckParameter(ChargeOptimizationMethod, isEqualIgnoreCase("SD") ||
85 isEqualIgnoreCase("CG") ||
86 isEqualIgnoreCase("BFGS"));
87 CheckParameter(MaxIterations, isPositive());
88 CheckParameter(TargetTemp, isNonNegative());
89 CheckParameter(TauThermostat, isPositive());
90 CheckParameter(DragCoefficient, isPositive());
91 RealType zero = 0.0;
92 RealType one = 1.0;
93 CheckParameter(InitialStepSize,
94 isGreaterThan(zero) && isLessThanOrEqualTo(one));
95 }
96
97} // namespace OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.