OpenMD 3.1
Molecular Dynamics in the Open
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ForceFieldOptions.hpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
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8 * 1. Redistributions of source code must retain the above copyright notice,
9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
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16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef IO_FORCEFIELDOPTIONS_HPP
46#define IO_FORCEFIELDOPTIONS_HPP
47
48#include "io/ParamConstraint.hpp"
49#include "types/DataHolder.hpp"
50#include "utils/ParameterManager.hpp"
51#include "utils/StringUtils.hpp"
52#include "utils/simError.h"
53
54namespace OpenMD {
55
57 DeclareParameter(Name, std::string);
58 DeclareParameter(vdWtype, std::string);
59 DeclareParameter(DistanceMixingRule, std::string);
60 DeclareParameter(DistanceType, std::string);
61 DeclareParameter(EnergyMixingRule, std::string);
62 DeclareParameter(EnergyUnitScaling, RealType);
63 DeclareParameter(MetallicEnergyUnitScaling, RealType);
64 DeclareParameter(FluctuatingChargeEnergyUnitScaling, RealType);
65 DeclareParameter(DistanceUnitScaling, RealType);
66 DeclareParameter(AngleUnitScaling, RealType);
67 DeclareParameter(ChargeUnitScaling, RealType);
68 DeclareParameter(OxidationStateScaling, RealType);
69 DeclareParameter(TorsionAngleConvention, std::string);
70 DeclareParameter(vdw12scale, RealType);
71 DeclareParameter(vdw13scale, RealType);
72 DeclareParameter(vdw14scale, RealType);
73 DeclareParameter(BondForceConstantScaling, RealType);
74 DeclareParameter(BendForceConstantScaling, RealType);
75 DeclareParameter(electrostatic12scale, RealType);
76 DeclareParameter(electrostatic13scale, RealType);
77 DeclareParameter(electrostatic14scale, RealType);
78 DeclareParameter(GayBerneMu, RealType);
79 DeclareParameter(GayBerneNu, RealType);
80 DeclareParameter(EAMMixingMethod, std::string);
81 DeclareParameter(DelayedParameterCalculation, bool);
82
83 public:
86 ForceFieldOptions& operator=(const ForceFieldOptions&);
87
88 void validateOptions() {
89 CheckParameter(vdWtype, isEqualIgnoreCase(std::string("Lennard-Jones")));
90 CheckParameter(DistanceMixingRule,
91 isEqualIgnoreCase(std::string("arithmetic")) ||
92 isEqualIgnoreCase(std::string("geometric")) ||
93 isEqualIgnoreCase(std::string("cubic")));
94 CheckParameter(DistanceType, isEqualIgnoreCase(std::string("sigma")) ||
95 isEqualIgnoreCase(std::string("Rmin")));
96 CheckParameter(EnergyMixingRule,
97 isEqualIgnoreCase(std::string("arithmetic")) ||
98 isEqualIgnoreCase(std::string("geometric")) ||
99 isEqualIgnoreCase(std::string("hhg")));
100 CheckParameter(TorsionAngleConvention,
101 isEqualIgnoreCase(std::string("180_is_trans")) ||
102 isEqualIgnoreCase(std::string("0_is_trans")));
103 CheckParameter(EAMMixingMethod,
104 isEqualIgnoreCase(std::string("Johnson")) ||
105 isEqualIgnoreCase(std::string("Daw")) ||
106 isEqualIgnoreCase(std::string("DREAM1")) ||
107 isEqualIgnoreCase(std::string("DREAM2")));
108 }
109
110 bool setData(const std::string& keyword, const std::string& value) {
111 bool result(false);
112 ParamMap::iterator i = parameters_.find(keyword);
113 if (i != parameters_.end()) {
114 if (isInteger(value)) {
115 int ival = lexi_cast<int>(value);
116 result = i->second->setData(ival);
117 } else if (isType<RealType>(value)) {
118 RealType dval = lexi_cast<RealType>(value);
119 result = i->second->setData(dval);
120 } else {
121 result = i->second->setData(value);
122 }
123
124 if (!result) {
125 snprintf(painCave.errMsg, MAX_SIM_ERROR_MSG_LENGTH,
126 "Unrecognized data type for keyword: %s = %s\n",
127 keyword.c_str(), value.c_str());
128 painCave.isFatal = 1;
129 simError();
130 }
131 } else {
132 snprintf(painCave.errMsg, MAX_SIM_ERROR_MSG_LENGTH,
133 "%s is an unrecognized keyword\n", keyword.c_str());
134 painCave.isFatal = 0;
135 simError();
136 }
137
138 return result;
139 }
140
141 private:
142 using ParamMap = std::map<std::string, ParameterBase*>;
143 ParamMap parameters_;
144 };
145} // namespace OpenMD
146
147#endif
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.