OpenMD 3.0
Molecular Dynamics in the Open
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FreqFlucCorrFunc.hpp
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43 */
44
45/*! \file FreqFlucCorrFunc.hpp
46 \brief Frequency Fluctuation Correlation Function
47*/
48
49#ifndef APPLICATIONS_DYNAMICPROPS_FREQFLUCCORRFUNC_HPP
50#define APPLICATIONS_DYNAMICPROPS_FREQFLUCCORRFUNC_HPP
51
52#include <string>
53#include <vector>
54
55#include "applications/dynamicProps/TimeCorrFunc.hpp"
56#include "brains/SimInfo.hpp"
58#include "selection/SelectionManager.hpp"
59#include "utils/Accumulator.hpp"
60
61namespace OpenMD {
62
63 //! Frequency Fluctuation Correlation Function
64 /*! See <http://dx.doi.org/10.1021/jp010798o>
65
66 Williams, Loring, and Fayer, J. Phys. Chem. B 2001, 105, 4068-4071 for
67 details
68
69 Makes an assumption that the frequency depends on the
70 orientation of the dipole relative to the local Electric
71 Field. Requires a preCorrelate to compute the mean of
72 \f$ = \langle \mathbf{E} \cdot \mathbf{u} \rangle \f$
73 */
74
75 class FreqFlucCorrFunc : public ObjectACF<RealType> {
76 public:
77 FreqFlucCorrFunc(SimInfo* info, const std::string& filename,
78 const std::string& sele1, const std::string& sele2);
79
80 private:
81 virtual int computeProperty1(int frame, StuntDouble* sd);
82 virtual RealType calcCorrVal(int frame1, int frame2, int id1, int id2);
83 virtual void validateSelection(SelectionManager& seleMan);
84
85 std::vector<std::vector<RealType>> ue_;
86 Utils::RealAccumulator ueStats_ {};
87 };
88} // namespace OpenMD
89
90#endif
Frequency Fluctuation Correlation Function.
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
"Don't move, or you're dead! Stand up! Captain, we've got them!"
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.