OpenMD 3.2
Molecular Dynamics in the Open
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GenericData.hpp
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1/*
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30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/**
49 * @file GenericData.hpp
50 * @brief
51 * @author tlin
52 * @date 09/20/2004
53 * @version 1.0
54 */
55
56#ifndef UTIL_GENERICDATA_HPP
57#define UTIL_GENERICDATA_HPP
58
59#include <config.h>
60
61#include <list>
62#include <string>
63#include <vector>
64
65namespace OpenMD {
66
67 /**
68 * @ class GenericData GenericData.hpp "utils/GenericData.hpp"
69 * @brief Base class for generic data which is associated with an id
70 */
71 class GenericData {
72 public:
73 GenericData() : id_("UndefinedGenericData") {}
74
75 GenericData(const std::string& id) { setID(id); }
76
77 /** virtual destructor */
78 virtual ~GenericData() {}
79
80 /**
81 * Returns the id of this generic data
82 *
83 * @return the id of this generic data
84 *
85 * @see #setID
86 */
87 const std::string getID() const { return id_; }
88
89 /**
90 * Sets the id of this generic data
91 *
92 * @param id the id to be set
93 *
94 * @see #getID
95 */
96 void setID(const std::string& id) { id_ = id; }
97
98 private:
100 GenericData& operator=(GenericData&);
101 std::string id_;
102 };
103
104 /**
105 * @class SimpleTypeData
106 * @brief SimpleTypeData class is a POD repository class
107 * @warning ElemDataType must be copy constructible, and copy assignable
108 */
109 template<typename ElemDataType>
110 class SimpleTypeData : public GenericData {
111 public:
112 SimpleTypeData() : GenericData(), data_(ElemDataType()) {}
113 SimpleTypeData(const std::string& id) :
114 GenericData(id), data_(ElemDataType()) {}
115 SimpleTypeData(const std::string& id, const ElemDataType& data) :
116 GenericData(id), data_(data) {}
117 template<typename T>
118 SimpleTypeData(const SimpleTypeData<T>& s) {
119 data_ = s.getData();
120 }
121
122 SimpleTypeData<ElemDataType>& operator=(
123 const SimpleTypeData<ElemDataType>& s) {
124 if (this == &s) return *this;
125
126 data_ = s.getData();
127 return *this;
128 }
129
130 template<typename T>
131 SimpleTypeData<ElemDataType>& operator=(const SimpleTypeData<T>& s) {
132 data_ = s.getData();
133 return *this;
134 }
135
136 /** Returns POD data */
137 const ElemDataType& getData() const { return data_; }
138 ElemDataType& getData() { return data_; }
139 /**
140 * Sets POD data
141 * @param data POD data to be set
142 */
143 void setData(const ElemDataType& data) { data_ = data; }
144
145 private:
146 ElemDataType data_;
147 };
148
149 /** BoolGenericData is a generic data type contains a bool variable */
151
152 /** IntGenericData is a generic data type contains an integer variable */
154
155 /** FloatGenericData is a generic data type contains a float variable */
157
158 /** DoubleGenericData is a generic data type contains a RealType variable */
160
161 /**
162 * @typedef StringGenericData
163 * A generic data type contains a std::string variable
164 *
165 * @code
166 * StringGenericData* s = new StringGenericData("MyStringGenericData");
167 * PropertyMap propMap;
168 * GenericData* gdata;
169 *
170 * s->setData("OpenMD");
171 * propMap->addProperty(s);
172 *
173 * gdata = propMap->getPropertyByName("MyStringGenericData");
174 * if (gdata != NULL){
175 * s = dynamic_cast<StringGenericData*>(gdata);
176 * if (s != NULL)
177 * std::cout << s->getData() << std::endl;
178 * }
179 *
180 * @endcode
181 */
183
184 /**
185 * @class STLContainerTypeData
186 * @brief STL container type generic data which is associated with an id
187 *
188 * \tparam ContainerType
189 * \tparam ElemDataType
190 */
191 template<typename ElemDataType>
192 class VectorTypeData : public GenericData {
193 public:
194 using SelfType = VectorTypeData<ElemDataType>;
195
196 VectorTypeData(const std::string& id) : GenericData(id) {}
197
198 VectorTypeData(const SelfType& s) : data_(s) {}
199
200 SelfType& operator=(const SelfType& s) {
201 if (this == &s) return *this;
202
203 this->data_ = s.data_;
204 return *this;
205 }
206
207 private:
208 std::vector<ElemDataType> data_;
209 };
210
211 /**
212 * @typedef IntVectorGenericData
213 * A generic data type contains a std::vector<int> variable.
214 */
216
217 /**
218 * @typedef IntVectorGenericData
219 * A generic data type contains a std::vector<float> variable.
220 */
221 using FloatVectorGenericData = VectorTypeData<float>;
222
223 /**
224 * @typedef IntVectorGenericData
225 * A generic data type contains a std::vector<RealType> variable.
226 */
227 using DoubleVectorGenericData = VectorTypeData<RealType>;
228
229 /**
230 * @typedef StringVectorGenericData
231 * A generic data type contains a std::vector<string> variable.
232 *
233 * @code
234 * StringVectorGenericData* sv = new
235 * StringVectorGenericData("MyStringVector"); GenericData* gdata; PropertyMap
236 * propMap; std::vector<std::string>::iterator iter;
237 *
238 * sv->push_back("Hello World");
239 * sv->push_back("OpenMD");
240 *
241 * propMap.addProperty(sv);
242 *
243 * gdata = propMap.getPropertyByName("MyStringVector");
244 *
245 * if (gdata != NULL){
246 *
247 * sv = dynamic_cast<StringVectorGenericData*>(gdata);
248 *
249 * if (sv != NULL){
250 * for (iter = sv->begin(); iter != sv->end(); ++ iter)
251 * std::cout << *iter << std::endl;
252 * }
253 * }
254 * @endcode
255 */
257} // namespace OpenMD
258
259#endif // UTIL _GENERICDATA_HPP
@ class GenericData GenericData.hpp "utils/GenericData.hpp"
void setID(const std::string &id)
Sets the id of this generic data.
const std::string getID() const
Returns the id of this generic data.
virtual ~GenericData()
virtual destructor
SimpleTypeData class is a POD repository class.
const ElemDataType & getData() const
Returns POD data.
void setData(const ElemDataType &data)
Sets POD data.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
SimpleTypeData< bool > BoolGenericData
BoolGenericData is a generic data type contains a bool variable.
SimpleTypeData< float > FloatGenericData
FloatGenericData is a generic data type contains a float variable.
SimpleTypeData< RealType > DoubleGenericData
DoubleGenericData is a generic data type contains a RealType variable.
VectorTypeData< std::string > StringVectorGenericData
A generic data type contains a std::vector<string> variable.
SimpleTypeData< std::string > StringGenericData
A generic data type contains a std::string variable.
VectorTypeData< int > IntVectorGenericData
A generic data type contains a std::vector<int> variable.
SimpleTypeData< int > IntGenericData
IntGenericData is a generic data type contains an integer variable.