OpenMD 3.2
Molecular Dynamics in the Open
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LangevinHullForceModifier.hpp
1/*
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32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48#ifndef INTEGRATOR_LANGEVINHULLFORCEMODIFIER_HPP
49#define INTEGRATOR_LANGEVINHULLFORCEMODIFIER_HPP
50
51#include <map>
52#include <memory>
53#include <vector>
54
56#include "brains/Thermo.hpp"
57#include "brains/Velocitizer.hpp"
58#include "math/Hull.hpp"
59#include "math/Triangle.hpp"
61#include "utils/RandNumGen.hpp"
62
63using namespace std;
64namespace OpenMD {
65
66 /**
67 * @class LangevinHullForceModifier
68 * Force modifier for NPT Langevin Hull Dynamics applying friction
69 * and random forces as well as torques. Stochastic force is
70 * determined by the area of surface triangles on the convex hull.
71 * See: Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011),
72 * and Kohanoff et al. CHEMPHYSCHEM 6, 1848-1852 (2005).
73 */
74 class LangevinHullForceModifier : public ForceModifier {
75 public:
76 LangevinHullForceModifier(SimInfo* info);
77 ~LangevinHullForceModifier();
78
79 void modifyForces() override;
80
81 private:
82 std::vector<Vector3d> genTriangleForces(int nTriangles);
83
84 Globals* simParams_;
85 Utils::RandNumGenPtr randNumGen_;
86 std::normal_distribution<RealType> forceDistribution_;
87 std::unique_ptr<Velocitizer> veloMunge {nullptr};
88
89 RealType dt_;
90 RealType targetTemp_;
91 RealType targetPressure_;
92 RealType viscosity_;
93
94 enum HullTypeEnum { hullConvex, hullAlphaShape, hullUnknown };
95
96 std::map<string, HullTypeEnum> stringToEnumMap_;
97 HullTypeEnum hullType_;
98
99 bool doThermalCoupling_;
100 bool doPressureCoupling_;
101
102 Hull* surfaceMesh_;
103 std::vector<StuntDouble*> localSites_;
104 };
105} // namespace OpenMD
106
107#endif // INTEGRATOR_LANGEVINHULLFORCEMODIFIER_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.