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MAW.hpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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#ifndef NONBONDED_MAW_HPP
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#define NONBONDED_MAW_HPP
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#include "
brains/ForceField.hpp
"
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#include "
math/Vector3.hpp
"
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#include "nonbonded/NonBondedInteraction.hpp"
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#include "types/MAWInteractionType.hpp"
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using namespace
std;
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namespace
OpenMD
{
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struct
MAWInteractionData
{
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RealType De;
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RealType Re;
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RealType beta;
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RealType ca1;
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RealType cb1;
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bool
i_is_Metal;
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bool
j_is_Metal;
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};
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class
MAW :
public
VanDerWaalsInteraction {
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public
:
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MAW();
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void
setForceField(
ForceField
* ff) { forceField_ = ff; };
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void
setSimulatedAtomTypes(AtomTypeSet& simtypes) {
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simTypes_ = simtypes;
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initialize();
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};
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void
addExplicitInteraction(
AtomType
* atype1,
AtomType
* atype2, RealType De,
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RealType beta, RealType Re, RealType ca1,
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RealType cb1);
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virtual
void
calcForce(
InteractionData
& idat);
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virtual
string
getName() {
return
name_; }
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virtual
int
getHash() {
return
MAW_INTERACTION; }
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virtual
RealType getSuggestedCutoffRadius(
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pair<AtomType*, AtomType*> atypes);
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private
:
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void
initialize();
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bool
initialized_;
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set<int> MAWtypes;
/**< The set of AtomType idents that are MAW types */
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vector<int>
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MAWtids;
/**< The mapping from AtomType ident -> MAW type ident */
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vector<vector<MAWInteractionData>>
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MixingMap;
/**< The mixing parameters
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between two Morse types */
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ForceField
* forceField_;
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AtomTypeSet simTypes_;
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string
name_;
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};
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}
// namespace OpenMD
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#endif
ForceField.hpp
Vector3.hpp
OpenMD::AtomType
AtomType is what OpenMD looks to for unchanging data about an atom.
Definition
AtomType.hpp:69
OpenMD::ForceField
Definition
ForceField.hpp:77
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
OpenMD::InteractionData
The InteractionData struct.
Definition
NonBondedInteraction.hpp:106
OpenMD::MAWInteractionData
Definition
MAW.hpp:59
nonbonded
MAW.hpp
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