OpenMD 3.2
Molecular Dynamics in the Open
Loading...
Searching...
No Matches
MinimizerParameters.cpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
7 *
8 * 1. Redistributions of source code must retain the above copyright notice,
9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
13 * and/or other materials provided with the distribution.
14 *
15 * 3. Neither the name of the copyright holder nor the names of its
16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
20 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
23 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
24 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
25 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
26 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
27 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29 * POSSIBILITY OF SUCH DAMAGE.
30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48#include "optimization/MinimizerParameters.hpp"
49
50#include <cstdlib>
51#include <cstring>
52#include <iostream>
53
54namespace OpenMD {
55 MinimizerParameters::MinimizerParameters() {
56 DefineOptionalParameterWithDefaultValue(UseMinimizer, "useMinimizer",
57 false);
58 DefineOptionalParameterWithDefaultValue(Method, "method", "SD");
59 DefineOptionalParameterWithDefaultValue(MaxIterations, "maxIterations",
60 1000);
61 DefineOptionalParameterWithDefaultValue(
62 MaxStationaryStateIterations, "maxStationaryStateIterations", 100);
63 DefineOptionalParameterWithDefaultValue(RootEpsilon, "rootEpsilon", 1e-5);
64 DefineOptionalParameterWithDefaultValue(FunctionEpsilon, "functionEpsilon",
65 1e-5);
66 DefineOptionalParameterWithDefaultValue(GradientNormEpsilon,
67 "gradientNormEpsilon", 1e-5);
68 DefineOptionalParameterWithDefaultValue(InitialStepSize, "initialStepSize",
69 0.1);
70 }
71
72 MinimizerParameters::~MinimizerParameters() {}
73
74 void MinimizerParameters::validate() {
75 CheckParameter(Method, isEqualIgnoreCase("SD") || isEqualIgnoreCase("CG") ||
76 isEqualIgnoreCase("BFGS"));
77 CheckParameter(MaxIterations, isPositive());
78 int one = 1;
79 int mi = this->getMaxIterations();
80 RealType zero = 0.0;
81 RealType oneR = 1.0;
82 CheckParameter(MaxStationaryStateIterations,
83 isGreaterThanOrEqualTo(one) && isLessThanOrEqualTo(mi));
84 CheckParameter(RootEpsilon, isPositive());
85 CheckParameter(GradientNormEpsilon, isPositive());
86 CheckParameter(InitialStepSize,
87 isGreaterThan(zero) && isLessThanOrEqualTo(oneR));
88 }
89} // namespace OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.