OpenMD 3.1
Molecular Dynamics in the Open
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MomentumHistogram.hpp
1/*
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32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/*
46 * Calculates the momentum profile for selected atom.
47 * Created by Hemanta Bhattarai on 04/30/19.
48 * @author Hemanta Bhattarai
49 */
50
51#ifndef APPLICATIONS_STATICPROPS_MOMENTUMHISTOGRAM_HPP
52#define APPLICATIONS_STATICPROPS_MOMENTUMHISTOGRAM_HPP
53
54#include <string>
55#include <vector>
56
57#include "applications/staticProps/StaticAnalyser.hpp"
58#include "selection/SelectionEvaluator.hpp"
59#include "selection/SelectionManager.hpp"
60
61namespace OpenMD {
62
64 public:
65 MomentumHistogram(SimInfo* info, const std::string& filename,
66 const std::string& sele, int nbins, int momentum_type,
67 int momentum_component);
68
69 int getNBins() { return nBins_; }
70
71 virtual void process();
72
73 private:
74 virtual void write();
75
76 Snapshot* currentSnapshot_;
77
78 int nProcessed_;
79 std::string selectionScript_;
80 SelectionEvaluator evaluator_;
81 SelectionManager seleMan_;
82
83 int nBins_;
84 int mom_type_;
85 std::string momentumLabel_;
86 int mom_comp_;
87 std::string componentLabel_;
88
89 std::vector<RealType> bincenter_;
90 std::vector<RealType> histList_;
91 };
92} // namespace OpenMD
93
94#endif
"selection/SelectionEvaluator"
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
The Snapshot class is a repository storing dynamic data during a Simulation.
Definition Snapshot.hpp:147
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.