OpenMD 3.1
Molecular Dynamics in the Open
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MultipoleAdapter.cpp
1/*
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#include "types/MultipoleAdapter.hpp"
46
47#include <cstdio>
48#include <memory>
49
50#include "utils/simError.h"
51
52namespace OpenMD {
53
54 bool MultipoleAdapter::isMultipole() {
55 return at_->hasProperty(MultipoleTypeID);
56 }
57
58 MultipoleAtypeParameters MultipoleAdapter::getMultipoleParam() {
59 if (!isMultipole()) {
60 snprintf(
61 painCave.errMsg, MAX_SIM_ERROR_MSG_LENGTH,
62 "MultipoleAdapter::getMultipoleParam was passed an atomType (%s)\n"
63 "\tthat does not appear to be a Multipole atom.\n",
64 at_->getName().c_str());
65 painCave.severity = OPENMD_ERROR;
66 painCave.isFatal = 1;
67 simError();
68 }
69
70 std::shared_ptr<GenericData> data = at_->getPropertyByName(MultipoleTypeID);
71 if (data == nullptr) {
72 snprintf(painCave.errMsg, MAX_SIM_ERROR_MSG_LENGTH,
73 "MultipoleAdapter::getMultipoleParam could not find Multipole\n"
74 "\tparameters for atomType %s.\n",
75 at_->getName().c_str());
76 painCave.severity = OPENMD_ERROR;
77 painCave.isFatal = 1;
78 simError();
79 }
80
81 std::shared_ptr<MultipoleAtypeData> multipoleData =
82 std::dynamic_pointer_cast<MultipoleAtypeData>(data);
83 if (multipoleData == nullptr) {
84 snprintf(painCave.errMsg, MAX_SIM_ERROR_MSG_LENGTH,
85 "MultipoleAdapter::getMultipoleParam could not convert\n"
86 "\tGenericData to MultipoleAtypeData for atom type %s\n",
87 at_->getName().c_str());
88 painCave.severity = OPENMD_ERROR;
89 painCave.isFatal = 1;
90 simError();
91 }
92
93 return multipoleData->getData();
94 }
95
96 bool MultipoleAdapter::isDipole() {
97 if (isMultipole()) {
98 MultipoleAtypeParameters multipoleParam = getMultipoleParam();
99 return multipoleParam.isDipole;
100 } else
101 return false;
102 }
103 bool MultipoleAdapter::isQuadrupole() {
104 if (isMultipole()) {
105 MultipoleAtypeParameters multipoleParam = getMultipoleParam();
106 return multipoleParam.isQuadrupole;
107 } else
108 return false;
109 }
110
111 Vector3d MultipoleAdapter::getDipole() {
112 MultipoleAtypeParameters multipoleParam = getMultipoleParam();
113 return multipoleParam.dipole;
114 }
115
116 Mat3x3d MultipoleAdapter::getQuadrupole() {
117 MultipoleAtypeParameters multipoleParam = getMultipoleParam();
118 return multipoleParam.quadrupole;
119 }
120
121 void MultipoleAdapter::makeMultipole(Vector3d dipole, Mat3x3d quadrupole,
122 bool isDipole, bool isQuadrupole) {
123 if (isMultipole()) { at_->removeProperty(MultipoleTypeID); }
124
125 MultipoleAtypeParameters multipoleParam {};
126
127 multipoleParam.dipole = dipole;
128 multipoleParam.quadrupole = quadrupole;
129
130 multipoleParam.isDipole = isDipole;
131 multipoleParam.isQuadrupole = isQuadrupole;
132
133 at_->addProperty(
134 std::make_shared<MultipoleAtypeData>(MultipoleTypeID, multipoleParam));
135 }
136} // namespace OpenMD
std::shared_ptr< GenericData > getPropertyByName(const string &propName)
Returns property.
Definition AtomType.cpp:134
void removeProperty(const string &propName)
Removes property from PropertyMap by name.
Definition AtomType.cpp:114
bool hasProperty(const string &propName)
Checks if property is in this PropertyMap.
Definition AtomType.cpp:127
void addProperty(std::shared_ptr< GenericData > genData)
Adds property into property map.
Definition AtomType.cpp:109
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.