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NPA.hpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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/**
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* @file NPA.hpp
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* @author tlin
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* @date 11/19/2004
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* @version 1.0
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*/
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#ifndef INTEGRATORS_NPA_HPP
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#define INTEGRATORS_NPA_HPP
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#include "
integrators/NPT.hpp
"
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namespace
OpenMD
{
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/**
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* @class NPA
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* Constant normal pressure and lateral surface area integrator
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* No thermostat!
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* @note Ikeguchi M.,J. Comput Chem, 25:529-542, 2004
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*/
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class
NPA :
public
NPT {
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public
:
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NPA(
SimInfo
* info) : NPT(info) {}
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protected
:
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Mat3x3d eta;
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private
:
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/* we need to implement moveA and moveB separately to leave out the
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* thermostatting
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*/
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virtual
void
moveA();
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virtual
void
moveB();
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virtual
void
evolveEtaA();
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virtual
void
evolveEtaB();
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virtual
bool
etaConverged();
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virtual
void
getVelScaleA(Vector3d& sc,
const
Vector3d& vel);
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virtual
void
getVelScaleB(Vector3d& sc,
int
index);
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virtual
void
getPosScale(
const
Vector3d& pos,
const
Vector3d& COM,
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int
index, Vector3d& sc);
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virtual
void
calcVelScale();
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virtual
void
scaleSimBox();
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virtual
RealType calcConservedQuantity();
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virtual
void
loadEta();
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virtual
void
saveEta();
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Mat3x3d oldEta;
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Mat3x3d prevEta;
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Mat3x3d vScale;
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};
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}
// namespace OpenMD
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#endif
// INTEGRATORS_NPTF_HPP
NPT.hpp
OpenMD::SimInfo
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition
SimInfo.hpp:96
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
integrators
NPA.hpp
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