OpenMD 3.2
Molecular Dynamics in the Open
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NPA.hpp
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34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/**
49 * @file NPA.hpp
50 * @author tlin
51 * @date 11/19/2004
52 * @version 1.0
53 */
54
55#ifndef INTEGRATORS_NPA_HPP
56#define INTEGRATORS_NPA_HPP
57
58#include "integrators/NPT.hpp"
59
60namespace OpenMD {
61
62 /**
63 * @class NPA
64 * Constant normal pressure and lateral surface area integrator
65 * No thermostat!
66 * @note Ikeguchi M.,J. Comput Chem, 25:529-542, 2004
67 */
68 class NPA : public NPT {
69 public:
70 NPA(SimInfo* info) : NPT(info) {}
71
72 protected:
73 Mat3x3d eta;
74
75 private:
76 /* we need to implement moveA and moveB separately to leave out the
77 * thermostatting
78 */
79
80 virtual void moveA();
81 virtual void moveB();
82
83 virtual void evolveEtaA();
84 virtual void evolveEtaB();
85
86 virtual bool etaConverged();
87
88 virtual void getVelScaleA(Vector3d& sc, const Vector3d& vel);
89 virtual void getVelScaleB(Vector3d& sc, int index);
90 virtual void getPosScale(const Vector3d& pos, const Vector3d& COM,
91 int index, Vector3d& sc);
92
93 virtual void calcVelScale();
94
95 virtual void scaleSimBox();
96 virtual RealType calcConservedQuantity();
97
98 virtual void loadEta();
99 virtual void saveEta();
100
101 Mat3x3d oldEta;
102 Mat3x3d prevEta;
103 Mat3x3d vScale;
104 };
105} // namespace OpenMD
106
107#endif // INTEGRATORS_NPTF_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.