OpenMD 3.2
Molecular Dynamics in the Open
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NPAT.hpp
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34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/**
49 * @file NPAT.hpp
50 * @author tlin
51 * @date 11/19/2004
52 * @version 1.0
53 */
54
55#ifndef INTEGRATORS_NPAT_HPP
56#define INTEGRATORS_NPAT_HPP
57
58#include "integrators/NPT.hpp"
59
60namespace OpenMD {
61
62 /**
63 * @class NPAT
64 * Constant normal pressure and lateral surface area integrator
65 * @note Ikeguchi M.,J. Comput Chem, 25:529-542, 2004
66 */
67 class NPAT : public NPT {
68 public:
69 NPAT(SimInfo* info);
70
71 protected:
72 Mat3x3d eta;
73
74 private:
75 virtual void evolveEtaA();
76 virtual void evolveEtaB();
77
78 virtual bool etaConverged();
79
80 virtual void getVelScaleA(Vector3d& sc, const Vector3d& vel);
81 virtual void getVelScaleB(Vector3d& sc, int index);
82 virtual void getPosScale(const Vector3d& pos, const Vector3d& COM,
83 int index, Vector3d& sc);
84
85 virtual void calcVelScale();
86
87 virtual void scaleSimBox();
88 virtual RealType calcConservedQuantity();
89
90 virtual void loadEta();
91 virtual void saveEta();
92
93 Mat3x3d oldEta_;
94 Mat3x3d prevEta_;
95 Mat3x3d vScale_;
96 unsigned int axis_;
97 };
98} // namespace OpenMD
99
100#endif // INTEGRATORS_NPTF_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.