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Molecular Dynamics in the Open
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NPTf.hpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the appropriate papers when you publish your
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* work. Good starting points are:
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*
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* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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*/
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/**
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* @file NPTf.hpp
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* @author tlin
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* @date 11/19/2004
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* @version 1.0
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*/
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#ifndef INTEGRATORS_NPTF_HPP
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#define INTEGRATORS_NPTF_HPP
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#include "
integrators/NPT.hpp
"
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namespace
OpenMD
{
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class
NPTf
:
public
NPT
{
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public
:
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NPTf
(
SimInfo
* info) :
NPT
(info) {}
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protected
:
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Mat3x3d
eta;
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private
:
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virtual
void
evolveEtaA();
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virtual
void
evolveEtaB();
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virtual
bool
etaConverged();
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virtual
void
getVelScaleA(
Vector3d
& sc,
const
Vector3d
& vel);
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virtual
void
getVelScaleB(
Vector3d
& sc,
int
index);
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virtual
void
getPosScale(
const
Vector3d
& pos,
const
Vector3d
& COM,
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int
index,
Vector3d
& sc);
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virtual
void
calcVelScale();
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virtual
void
scaleSimBox();
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virtual
RealType calcConservedQuantity();
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virtual
void
loadEta();
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virtual
void
saveEta();
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Mat3x3d
oldEta;
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Mat3x3d
prevEta;
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Mat3x3d
vScale;
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};
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}
// namespace OpenMD
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#endif
// INTEGRATORS_NPTF_HPP
NPT.hpp
OpenMD::NPT
Definition
NPT.hpp:58
OpenMD::NPTf
Definition
NPTf.hpp:59
OpenMD::SimInfo
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition
SimInfo.hpp:93
OpenMD::SquareMatrix3< RealType >
OpenMD::Vector3< RealType >
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:60
integrators
NPTf.hpp
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