OpenMD 3.2
Molecular Dynamics in the Open
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NPTf.hpp
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36 * Good starting points for code and simulation methodology are:
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38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/**
49 * @file NPTf.hpp
50 * @author tlin
51 * @date 11/19/2004
52 * @version 1.0
53 */
54
55#ifndef INTEGRATORS_NPTF_HPP
56#define INTEGRATORS_NPTF_HPP
57
58#include "integrators/NPT.hpp"
59
60namespace OpenMD {
61
62 class NPTf : public NPT {
63 public:
64 NPTf(SimInfo* info) : NPT(info) {}
65
66 protected:
67 Mat3x3d eta;
68
69 private:
70 virtual void evolveEtaA();
71 virtual void evolveEtaB();
72
73 virtual bool etaConverged();
74
75 virtual void getVelScaleA(Vector3d& sc, const Vector3d& vel);
76 virtual void getVelScaleB(Vector3d& sc, int index);
77 virtual void getPosScale(const Vector3d& pos, const Vector3d& COM,
78 int index, Vector3d& sc);
79
80 virtual void calcVelScale();
81
82 virtual void scaleSimBox();
83 virtual RealType calcConservedQuantity();
84
85 virtual void loadEta();
86 virtual void saveEta();
87
88 Mat3x3d oldEta;
89 Mat3x3d prevEta;
90 Mat3x3d vScale;
91 };
92} // namespace OpenMD
93
94#endif // INTEGRATORS_NPTF_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.