OpenMD 3.2
Molecular Dynamics in the Open
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NVT.hpp
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37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/**
49 * @file NVT.hpp
50 * @author tlin
51 * @date 11/19/2004
52 * @version 1.0
53 */
54
55#ifndef INTEGRATOR_NVT_HPP
56#define INTEGRATOR_NVT_HPP
57
58#include "integrators/VelocityVerletIntegrator.hpp"
59
60namespace OpenMD {
61
62 /**
63 * @class NVT NVT.hpp "integrators/NVT.hpp"
64 * Basic thermostating via Hoover, Phys.Rev.A, 1985, Vol. 31 (5) 1695-1697
65 * @todo document
66 */
67 class NVT : public VelocityVerletIntegrator {
68 public:
69 NVT(SimInfo* info);
70
71 int getMaxIterationNumber() { return maxIterNum_; }
72
73 void setMaxIterationNumber(int maxIter) { maxIterNum_ = maxIter; }
74
75 RealType getTauThermostat() { return tauThermostat_; }
76
77 void setTauThermostat(RealType tt) { tauThermostat_ = tt; }
78
79 RealType getTargetTemp() { return targetTemp_; }
80
81 void setTargetTemp(RealType tt) { targetTemp_ = tt; }
82
83 RealType getChiTolerance() { return chiTolerance_; }
84
85 void setChiTolerance(RealType tol) { chiTolerance_ = tol; }
86
87 protected:
88 virtual void moveA();
89
90 virtual void moveB();
91
92 virtual void doUpdateSizes();
93
94 virtual void resetIntegrator();
95
96 private:
97 virtual RealType calcConservedQuantity();
98
99 int maxIterNum_;
100 RealType targetTemp_;
101 RealType tauThermostat_;
102 RealType chiTolerance_;
103
104 std::vector<Vector3d> oldVel_;
105 std::vector<Vector3d> oldJi_;
106 };
107} // namespace OpenMD
108
109#endif // INTEGRATOR_NVT_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.