NumberZ.hpp

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 * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
 * research, please cite the following paper when you publish your work:
 *
 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
 *
 * Good starting points for code and simulation methodology are:
 *
 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
 */
 
#ifndef APPLICATIONS_STATICPROPS_NUMBERZ_HPP
#define APPLICATIONS_STATICPROPS_NUMBERZ_HPP
 
#include <string>
#include <vector>
 
#include "applications/staticProps/StaticAnalyser.hpp"
#include "brains/SimInfo.hpp"
#include "brains/Thermo.hpp"
#include "selection/SelectionEvaluator.hpp"
#include "selection/SelectionManager.hpp"
 
namespace OpenMD {
 
  class NumberZ : public StaticAnalyser {
  public:
    NumberZ(SimInfo* info, const std::string& filename, const std::string& sele,
            int nzbins, int axis = 2);
 
    virtual void process();
 
  private:
    virtual void writeNumberZ();
 
    Snapshot* currentSnapshot_;
    int nProcessed_;
    std::string selectionScript_;
    SelectionEvaluator evaluator_;
    SelectionManager seleMan_;
    Thermo thermo_;
 
    std::vector<RealType> zBox_;
    std::vector<RealType> areas_;
    std::vector<RealType> numberZ_;
    int axis_;
    std::string axisLabel_;
  };
 
}  // namespace OpenMD
#endif