OpenMD 3.1
Molecular Dynamics in the Open
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OptionSectionParser.cpp
1/*
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#include "io/OptionSectionParser.hpp"
46
47#include "brains/ForceField.hpp"
48#include "types/AtomType.hpp"
49#include "utils/StringUtils.hpp"
50#include "utils/simError.h"
51
52namespace OpenMD {
53
54 OptionSectionParser::OptionSectionParser(ForceFieldOptions& options) :
55 options_(options) {
56 setSectionName("Options");
57 }
58
59 void OptionSectionParser::parseLine(ForceField&, const std::string& line,
60 int lineNo) {
61 StringTokenizer tokenizer(line);
62
63 if (tokenizer.countTokens() >= 2) {
64 std::string optionName = tokenizer.nextToken();
65 std::string optionValue = tokenizer.nextToken();
66
67 options_.setData(optionName, optionValue);
68
69 } else {
70 snprintf(painCave.errMsg, MAX_SIM_ERROR_MSG_LENGTH,
71 "OptionSectionParser Error: "
72 "Not enough tokens at line %d\n",
73 lineNo);
74 painCave.isFatal = 1;
75 simError();
76 }
77 }
78
79 void OptionSectionParser::validateSection(ForceField&) {
80 options_.validateOptions();
81 }
82
83} // namespace OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.