OpenMD 3.0
Molecular Dynamics in the Open
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PolynomialBendType.hpp
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35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file PolynomialBendType.hpp
47 * @author teng lin
48 * @date 11/16/2004
49 * @version 1.0
50 */
51
52#ifndef TYPES_POLYNOMIALBENDTYPE_HPP
53#define TYPES_POLYNOMIALBENDTYPE_HPP
54
55#include <iostream>
56
57#include "math/Polynomial.hpp"
58#include "types/BendType.hpp"
59
60namespace OpenMD {
61
62 /**
63 * @class PolynomialBendType PolynomialBendType.hpp
64 * "types/PolynomialBendType.hpp"
65 * @todo documentation
66 */
68 public:
69 PolynomialBendType(RealType theta) : BendType(theta) {}
70
71 void setCoefficient(int power, RealType coefficient) {
72 polynomial_.setCoefficient(power, coefficient);
73 }
74
75 RealType getCoefficient(int power) {
76 return polynomial_.getCoefficient(power);
77 }
78
79 void calcForce(RealType theta, RealType& V, RealType& dVdr) {
80 RealType delta = theta - theta0_;
81 V = polynomial_.evaluate(delta);
82 dVdr = polynomial_.evaluateDerivative(delta);
83 }
84
85 friend std::ostream& operator<<(std::ostream& os, PolynomialBendType& pbt);
86
87 private:
88 DoublePolynomial polynomial_;
89 };
90
91 std::ostream& operator<<(std::ostream& os, PolynomialBendType& pbt) {
92 DoublePolynomial::const_iterator i;
93
94 i = pbt.polynomial_.begin();
95
96 if (i == pbt.polynomial_.end()) {
97 os << "This PolynomialBendType contains nothing" << std::endl;
98 return os;
99 }
100
101 os << "This PolynomialBendType contains below terms:" << std::endl;
102
103 while (true) {
104 os << i->second << "*"
105 << "(theta - " << pbt.getTheta() << ")"
106 << "^" << i->first;
107
108 if (++i == pbt.polynomial_.end()) {
109 // If we reach the end of the polynomial pair, write out a
110 // newline and then escape the loop
111 os << std::endl;
112 break;
113 } else {
114 // otherwise, write out a "+"
115 os << " + ";
116 }
117 }
118 return os;
119 }
120} // namespace OpenMD
121
122#endif // TYPES_POLYNOMIALBENDTYPE_HPP
"types/PolynomialBendType.hpp"
Real evaluateDerivative(const Real &x)
Returns the first derivative of this polynomial.
Real getCoefficient(ExponentType exponent)
Returns the coefficient associated with the given power for this Polynomial.
Real evaluate(const Real &x)
Calculates the value of this Polynomial evaluated at the given x value.
void setCoefficient(int exponent, const Real &coefficient)
Set the coefficent of the specified exponent, if the coefficient is already there,...
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.