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Molecular Dynamics in the Open
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PropertyMap.cpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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#include "
utils/PropertyMap.hpp
"
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#include <cassert>
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#include <memory>
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#include <utility>
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namespace
OpenMD
{
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void
PropertyMap::addProperty
(std::shared_ptr<GenericData> genData) {
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std::map<std::string, std::shared_ptr<GenericData>>::iterator iter;
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iter = propMap_.find(genData->getID());
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if
(iter == propMap_.end()) {
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propMap_.insert(std::make_pair(genData->getID(), genData));
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}
else
{
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iter->second = genData;
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}
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}
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bool
PropertyMap::removeProperty
(
const
std::string& propName) {
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std::map<std::string, std::shared_ptr<GenericData>>::iterator iter;
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iter = propMap_.find(propName);
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if
(iter != propMap_.end()) {
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propMap_.erase(iter);
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return
true
;
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}
else
{
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// logger.warn("Can not find property with name: " + propName);
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return
false
;
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}
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}
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std::vector<std::string>
PropertyMap::getPropertyNames
() {
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std::vector<std::string> propNames;
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std::map<std::string, std::shared_ptr<GenericData>>::iterator iter;
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for
(iter = propMap_.begin(); iter != propMap_.end(); ++iter)
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propNames.push_back(iter->first);
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return
propNames;
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}
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std::vector<std::shared_ptr<GenericData>>
PropertyMap::getProperties
() {
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std::vector<std::shared_ptr<GenericData>> properties;
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std::map<std::string, std::shared_ptr<GenericData>>::iterator iter;
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for
(iter = propMap_.begin(); iter != propMap_.end(); ++iter)
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properties.push_back(iter->second);
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return
properties;
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}
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bool
PropertyMap::hasProperty
(
const
std::string& propName) {
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std::map<std::string, std::shared_ptr<GenericData>>::iterator iter;
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iter = propMap_.find(propName);
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if
(iter != propMap_.end())
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return
true
;
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else
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return
false
;
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}
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std::shared_ptr<GenericData>
PropertyMap::getPropertyByName
(
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const
std::string& propName) {
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std::map<std::string, std::shared_ptr<GenericData>>::iterator iter;
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iter = propMap_.find(propName);
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if
(iter != propMap_.end())
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return
iter->second;
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else
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return
NULL;
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}
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}
// namespace OpenMD
PropertyMap.hpp
OpenMD::PropertyMap::getPropertyByName
std::shared_ptr< GenericData > getPropertyByName(const std::string &propName)
Returns property.
Definition
PropertyMap.cpp:113
OpenMD::PropertyMap::getProperties
std::vector< std::shared_ptr< GenericData > > getProperties()
Returns all of the properties in PropertyMap.
Definition
PropertyMap.cpp:92
OpenMD::PropertyMap::addProperty
void addProperty(std::shared_ptr< GenericData > genData)
Adds property into property map.
Definition
PropertyMap.cpp:56
OpenMD::PropertyMap::removeProperty
bool removeProperty(const std::string &propName)
Removes property from PropertyMap by name.
Definition
PropertyMap.cpp:68
OpenMD::PropertyMap::hasProperty
bool hasProperty(const std::string &propName)
Checks if property is in this PropertyMap.
Definition
PropertyMap.cpp:102
OpenMD::PropertyMap::getPropertyNames
std::vector< std::string > getPropertyNames()
Returns all names of properties.
Definition
PropertyMap.cpp:82
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
utils
PropertyMap.cpp
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