OpenMD 3.2
Molecular Dynamics in the Open
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RealSphericalHarmonic.cpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
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9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
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15 * 3. Neither the name of the copyright holder nor the names of its
16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29 * POSSIBILITY OF SUCH DAMAGE.
30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
49
50#include <cmath>
51#include <cstdio>
52#include <limits>
53
54using namespace OpenMD;
55
56RealSphericalHarmonic::RealSphericalHarmonic() {}
57
58RealType RealSphericalHarmonic::getValueAt(RealType costheta, RealType phi) {
59 RealType p, phase;
60
61 // associated Legendre polynomial
62 p = LegendreP(L, M, costheta);
63
64 if (functionType == RSH_SIN) {
65 phase = sin((RealType)M * phi);
66 } else {
67 phase = cos((RealType)M * phi);
68 }
69
70 return coefficient * p * phase;
71}
72
73//---------------------------------------------------------------------------//
74//
75// RealType LegendreP (int l, int m, RealType x);
76//
77// Computes the value of the associated Legendre polynomial P_lm (x)
78// of order l at a given point.
79//
80// Input:
81// l = degree of the polynomial >= 0
82// m = parameter satisfying 0 <= m <= l,
83// x = point in which the computation is performed, range -1 <= x <= 1.
84// Returns:
85// value of the polynomial in x
86//
87//---------------------------------------------------------------------------//
88RealType RealSphericalHarmonic::LegendreP(int l, int m, RealType x) {
89 // check parameters
90 if (m < 0 || m > l || fabs(x) > 1.0) {
91 printf("LegendreP got a bad argument: l = %d\tm = %d\tx = %lf\n", l, m, x);
92 // return NAN;
93 return std::numeric_limits<RealType>::quiet_NaN();
94 }
95
96 RealType pmm = 1.0;
97 if (m > 0) {
98 RealType h = sqrt((1.0 - x) * (1.0 + x)), f = 1.0;
99 for (int i = 1; i <= m; i++) {
100 pmm *= -f * h;
101 f += 2.0;
102 }
103 }
104 if (l == m)
105 return pmm;
106 else {
107 RealType pmmp1 = x * (2 * m + 1) * pmm;
108 if (l == (m + 1))
109 return pmmp1;
110 else {
111 RealType pll = 0.0;
112 for (int ll = m + 2; ll <= l; ll++) {
113 pll = (x * (2 * ll - 1) * pmmp1 - (ll + m - 1) * pmm) / (ll - m);
114 pmm = pmmp1;
115 pmmp1 = pll;
116 }
117 return pll;
118 }
119 }
120}
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.