OpenMD 3.1
Molecular Dynamics in the Open
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RestraintForceModifier.hpp
1/*
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35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef RESTRAINTS_RESTRAINTFORCEMODIFIER_HPP
46#define RESTRAINTS_RESTRAINTFORCEMODIFIER_HPP
47
48#include <map>
49#include <string>
50#include <vector>
51
52#include "brains/ForceModifier.hpp"
53#include "brains/Snapshot.hpp"
54#include "io/RestWriter.hpp"
56
57namespace OpenMD {
58
60 public:
63
64 void modifyForces() override;
65
66 protected:
67 RealType doRestraints(RealType scalingFactor);
68 RealType getUnscaledPotential() { return unscaledPotential_; }
69
70 private:
71 std::vector<Restraint*> restraints_;
72 std::vector<Molecule*> restrainedMols_;
73 std::vector<StuntDouble*> restrainedObjs_;
74 RealType unscaledPotential_;
75
76 std::vector<std::map<int, Restraint::RealPair>> restInfo_;
77 std::string restOutput_;
78 RealType currRestTime_;
79 RealType restTime_;
80 RestWriter* restOut;
81 Snapshot* currSnapshot_;
82 };
83} // namespace OpenMD
84
85#endif // RESTRAINTS_RESTRAINTFORCEMODIFIER_HPP
Abstract class for external ForceModifier classes.
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
The Snapshot class is a repository storing dynamic data during a Simulation.
Definition Snapshot.hpp:147
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.