OpenMD 3.2
Molecular Dynamics in the Open
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ShortRangeInteraction.cpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
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8 * 1. Redistributions of source code must retain the above copyright notice,
9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
13 * and/or other materials provided with the distribution.
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16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
20 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
23 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29 * POSSIBILITY OF SUCH DAMAGE.
30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48#include "primitives/ShortRangeInteraction.hpp"
49
50#include <memory>
51
52namespace OpenMD {
53
54 ShortRangeInteraction::ShortRangeInteraction() :
55 globalIndex_(-1), localIndex_(-1) {}
56
57 ShortRangeInteraction::~ShortRangeInteraction() {}
58
60 int id = snapshotMan_->getCurrentSnapshot()->getID();
61 return getValue(id);
62 }
63
65 int id = snapshotMan_->getPrevSnapshot()->getID();
66 return getValue(id);
67 }
68
70 std::shared_ptr<GenericData> genData) {
71 properties_.addProperty(genData);
72 }
73
74 void ShortRangeInteraction::removeProperty(const std::string& propName) {
75 properties_.removeProperty(propName);
76 }
77
78 std::vector<std::string> ShortRangeInteraction::getPropertyNames() {
79 return properties_.getPropertyNames();
80 }
81
82 std::vector<std::shared_ptr<GenericData>>
84 return properties_.getProperties();
85 }
86
87 std::shared_ptr<GenericData> ShortRangeInteraction::getPropertyByName(
88 const std::string& propName) {
89 return properties_.getPropertyByName(propName);
90 }
91} // namespace OpenMD
virtual RealType getValue()
Returns the current value of this ShortRangeInteraction.
virtual RealType getPrevValue()
Returns the previous value of this ShortRangeInteraction.
std::vector< std::shared_ptr< GenericData > > getProperties()
Returns all of the properties in PropertyMap.
std::shared_ptr< GenericData > getPropertyByName(const std::string &propName)
Returns property.
void addProperty(std::shared_ptr< GenericData > genData)
Adds property into property map.
std::vector< std::string > getPropertyNames()
Returns all names of properties.
void removeProperty(const std::string &propName)
Removes property from PropertyMap by name.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.