OpenMD 3.2
Molecular Dynamics in the Open
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SnapshotManager.hpp
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32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/**
49 * @file SnapshotManager.hpp
50 * @author tlin
51 * @date 10/20/2004
52 * @version 1.0
53 */
54
55#ifndef BRAINS_SNAPSHOTMANAGER_HPP
56#define BRAINS_SNAPSHOTMANAGER_HPP
57
58#include "brains/Snapshot.hpp"
59
60namespace OpenMD {
61
62 /**
63 * @class SnapshotManager SnapshotManager.hpp "brains/SnapshotManager.hpp"
64 * @brief SnapshotManager class is an abstract class which maintains
65 * a series of snapshots.
66 *
67 * @see SimSnapshotManager
68 * @see PropSnapshotManager
69 */
70 class SnapshotManager {
71 public:
72 virtual ~SnapshotManager() {
73 delete currentSnapshot_;
74 delete previousSnapshot_;
75 }
76
77 virtual bool advance() { return true; }
78 virtual bool resetToPrevious() { return true; }
79
80 virtual Snapshot* getSnapshot(int id) = 0;
81
82 /**
83 * Returns the pointer of previous snapshot
84 * @return the pointer of previous snapshot
85 */
86 Snapshot* getPrevSnapshot() { return previousSnapshot_; }
87
88 /**
89 * Returns the pointer of current snapshot
90 * @return the pointer of current snapshot
91 */
92 Snapshot* getCurrentSnapshot() { return currentSnapshot_; }
93
94 int getAtomStorageLayout() { return atomStorageLayout_; }
95 int getRigidBodyStorageLayout() { return rigidBodyStorageLayout_; }
96 int getCutoffGroupStorageLayout() { return cutoffGroupStorageLayout_; }
97
98 private:
99 int atomStorageLayout_;
100 int rigidBodyStorageLayout_;
101 int cutoffGroupStorageLayout_;
102
103 protected:
104 SnapshotManager(int atomStorageLayout, int rigidBodyStorageLayout,
105 int cutoffGroupStorageLayout) :
106 atomStorageLayout_(atomStorageLayout),
107 rigidBodyStorageLayout_(rigidBodyStorageLayout),
108 cutoffGroupStorageLayout_(cutoffGroupStorageLayout),
109 currentSnapshot_(NULL), previousSnapshot_(NULL) {}
110
111 Snapshot* currentSnapshot_;
112 Snapshot* previousSnapshot_;
113 };
114} // namespace OpenMD
115
116#endif // BRAINS_SNAPSHOTMANAGER_HPP
The Snapshot class is a repository storing dynamic data during a Simulation.
Definition Snapshot.hpp:166
Snapshot * getPrevSnapshot()
Returns the pointer of previous snapshot.
Snapshot * getCurrentSnapshot()
Returns the pointer of current snapshot.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.