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Molecular Dynamics in the Open
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SnapshotManager.hpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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/**
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* @file SnapshotManager.hpp
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* @author tlin
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* @date 10/20/2004
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* @version 1.0
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*/
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#ifndef BRAINS_SNAPSHOTMANAGER_HPP
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#define BRAINS_SNAPSHOTMANAGER_HPP
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#include "brains/Snapshot.hpp"
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namespace
OpenMD
{
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/**
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* @class SnapshotManager SnapshotManager.hpp "brains/SnapshotManager.hpp"
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* @brief SnapshotManager class is an abstract class which maintains
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* a series of snapshots.
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*
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* @see SimSnapshotManager
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* @see PropSnapshotManager
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*/
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class
SnapshotManager {
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public
:
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virtual
~SnapshotManager() {
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delete
currentSnapshot_;
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delete
previousSnapshot_;
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}
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virtual
bool
advance() {
return
true
; }
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virtual
bool
resetToPrevious() {
return
true
; }
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virtual
Snapshot
* getSnapshot(
int
id
) = 0;
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/**
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* Returns the pointer of previous snapshot
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* @return the pointer of previous snapshot
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*/
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Snapshot
*
getPrevSnapshot
() {
return
previousSnapshot_; }
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/**
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* Returns the pointer of current snapshot
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* @return the pointer of current snapshot
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*/
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Snapshot
*
getCurrentSnapshot
() {
return
currentSnapshot_; }
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int
getAtomStorageLayout() {
return
atomStorageLayout_; }
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int
getRigidBodyStorageLayout() {
return
rigidBodyStorageLayout_; }
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int
getCutoffGroupStorageLayout() {
return
cutoffGroupStorageLayout_; }
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private
:
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int
atomStorageLayout_;
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int
rigidBodyStorageLayout_;
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int
cutoffGroupStorageLayout_;
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protected
:
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SnapshotManager(
int
atomStorageLayout,
int
rigidBodyStorageLayout,
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int
cutoffGroupStorageLayout) :
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atomStorageLayout_(atomStorageLayout),
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rigidBodyStorageLayout_(rigidBodyStorageLayout),
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cutoffGroupStorageLayout_(cutoffGroupStorageLayout),
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currentSnapshot_(NULL), previousSnapshot_(NULL) {}
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Snapshot* currentSnapshot_;
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Snapshot* previousSnapshot_;
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};
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}
// namespace OpenMD
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#endif
// BRAINS_SNAPSHOTMANAGER_HPP
OpenMD::Snapshot
The Snapshot class is a repository storing dynamic data during a Simulation.
Definition
Snapshot.hpp:166
OpenMD::SnapshotManager::getPrevSnapshot
Snapshot * getPrevSnapshot()
Returns the pointer of previous snapshot.
Definition
SnapshotManager.hpp:86
OpenMD::SnapshotManager::getCurrentSnapshot
Snapshot * getCurrentSnapshot()
Returns the pointer of current snapshot.
Definition
SnapshotManager.hpp:92
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
brains
SnapshotManager.hpp
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