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Molecular Dynamics in the Open
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TokenMap.cpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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#include "selection/TokenMap.hpp"
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namespace
OpenMD
{
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// Complete selection-language vocabulary in one place.
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// Each entry: { keyword, token-type }
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// Aliases (e.g. "&" for "and") map to the same token type.
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struct
TokenEntry {
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const
char
* keyword;
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int
tok;
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};
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static
const
TokenEntry tokenTable[] = {
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// commands
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{
"define"
, Token::define},
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{
"select"
, Token::select},
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// grouping
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{
"("
, Token::leftparen},
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{
")"
, Token::rightparen},
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// boolean operators (with aliases)
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{
"and"
, Token::opAnd},
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{
"&"
, Token::opAnd},
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{
"&&"
, Token::opAnd},
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{
"or"
, Token::opOr},
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{
","
, Token::opOr},
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{
"|"
, Token::opOr},
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{
"||"
, Token::opOr},
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{
"not"
, Token::opNot},
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{
"!"
, Token::opNot},
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// comparison operators
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{
"<"
, Token::opLT},
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{
"<="
, Token::opLE},
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{
">="
, Token::opGE},
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{
">"
, Token::opGT},
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{
"=="
, Token::opEQ},
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{
"!="
, Token::opNE},
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// keywords
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{
"within"
, Token::within},
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{
"."
, Token::dot},
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{
"to"
, Token::to},
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{
"all"
, Token::all},
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{
"none"
, Token::none},
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// atom properties
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{
"mass"
, Token::mass},
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{
"charge"
, Token::charge},
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{
"x"
, Token::x},
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{
"y"
, Token::y},
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{
"z"
, Token::z},
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{
"wrappedx"
, Token::wrappedX},
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{
"wrappedy"
, Token::wrappedY},
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{
"wrappedz"
, Token::wrappedZ},
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{
"r"
, Token::r},
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{
"atomno"
, Token::atomno},
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// geometric selectors
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{
"hull"
, Token::hull},
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{
"alphahull"
, Token::alphahull},
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};
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TokenMap::TokenMap() {
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for
(
const
auto
& entry : tokenTable) {
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std::string key(entry.keyword);
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tokenMap_.insert({key, Token(entry.tok, key)});
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}
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}
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Token
* TokenMap::getToken(
const
std::string& ident) {
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auto
i = tokenMap_.find(ident);
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return
i != tokenMap_.end() ? &(i->second) : NULL;
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}
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}
// namespace OpenMD
OpenMD::Token
Definition
SelectionToken.hpp:60
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
selection
TokenMap.cpp
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