OpenMD 3.1
Molecular Dynamics in the Open
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TorqueAutoCorrFunc.hpp
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35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef APPLICATIONS_DYNAMICPROPS_TORQUEAUTOCORRFUNC_HPP
46#define APPLICATIONS_DYNAMICPROPS_TORQUEAUTOCORRFUNC_HPP
47
48#include "applications/dynamicProps/TimeCorrFunc.hpp"
49
50namespace OpenMD {
51
52 class TorqueAutoCorrFunc : public ObjectACF<Mat3x3d> {
53 public:
54 TorqueAutoCorrFunc(SimInfo* info, const std::string& filename,
55 const std::string& sele1, const std::string& sele2);
56
57 private:
58 virtual void validateSelection(SelectionManager& seleMan);
59 virtual int computeProperty1(int frame, StuntDouble* sd);
60 virtual Mat3x3d calcCorrVal(int frame1, int frame2, int id1, int id2);
61 virtual void postCorrelate();
62
63 std::vector<std::vector<Vector3d>> torques_;
64 Vector3d sumTorques_;
65 int torquesCount_;
66 Vector3d propertyTemp;
67 };
68} // namespace OpenMD
69
70#endif
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
"Don't move, or you're dead! Stand up! Captain, we've got them!"
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.