OpenMD 3.2
Molecular Dynamics in the Open
Loading...
Searching...
No Matches
UniformField.hpp
Go to the documentation of this file.
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
7 *
8 * 1. Redistributions of source code must retain the above copyright notice,
9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
13 * and/or other materials provided with the distribution.
14 *
15 * 3. Neither the name of the copyright holder nor the names of its
16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
20 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
23 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
24 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
25 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
26 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
27 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29 * POSSIBILITY OF SUCH DAMAGE.
30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48/*! \file perturbations/UniformField.hpp
49 \brief Uniform Electric Field perturbation
50*/
51
52#ifndef PERTURBATIONS_UNIFORMFIELD_HPP
53#define PERTURBATIONS_UNIFORMFIELD_HPP
54
55#include "brains/ForceModifier.hpp"
56#include "brains/SimInfo.hpp"
57
58namespace OpenMD {
59
60 //! Applies a uniform (vector) electric field to the system
61 /*! The field is applied as an external perturbation. The user specifies
62
63 \code{.unparsed}
64 uniformField = (a, b, c);
65 \endcode
66
67 in the .omd file where the values of a, b, and c are in units of
68 \f$ V / \AA \f$
69
70 The electrostatic potential corresponding to this uniform field is
71
72 \f$ \phi(\mathbf{r}) = - a x - b y - c z \f$
73
74 which grows unbounded and is not periodic. For these reasons,
75 care should be taken in using a Uniform field with point charges.
76
77 The field itself is
78
79 \f$ \mathbf{E} = \left( \begin{array}{c} a \\ b \\ c \end{array} \right) \f$
80
81 The external field applies a force on charged atoms, \f$ \mathbf{F}
82 = C \mathbf{E} \f$. For dipolar atoms, the field applies both a
83 potential, \f$ U = - \mathbf{D} \cdot \mathbf{E} \f$ and a torque,
84 \f$ \mathbf{\tau} = \mathbf{D} \times \mathbf{E} \f$.
85 */
86 class UniformField : public ForceModifier {
87 public:
88 UniformField(SimInfo* info);
89
90 private:
91 void modifyForces() override;
92 void initialize();
93
94 bool initialized;
95 bool doUniformField;
96 bool doParticlePot;
97
98 Globals* simParams;
99 Vector3d EF;
100 };
101} // namespace OpenMD
102
103#endif
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.