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UreyBradleyBend.cpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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#include "
primitives/UreyBradleyBend.hpp
"
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namespace
OpenMD
{
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UreyBradleyBend::UreyBradleyBend(
Atom
* atom1,
Atom
* atom2,
Atom
* atom3,
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UreyBradleyBendType
* bt) :
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Bend
(atom1, atom2, atom3, bt),
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bond_(NULL) {
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bond_ =
new
Bond(atom1, atom3, bt->getHarmonicBondType());
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}
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UreyBradleyBend::~UreyBradleyBend() {
delete
bond_; }
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void
UreyBradleyBend::calcForce
(RealType& angle,
bool
doParticlePot) {
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Bend::calcForce
(angle, doParticlePot);
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bond_->calcForce(doParticlePot);
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if
(doParticlePot) { atoms_[1]->addParticlePot(bond_->getPotential()); }
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}
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}
// namespace OpenMD
UreyBradleyBend.hpp
OpenMD::Atom
Definition
Atom.hpp:62
OpenMD::Bend
Definition
Bend.hpp:74
OpenMD::Bend::calcForce
virtual void calcForce(RealType &angle, bool doParticlePot)
Definition
Bend.cpp:59
OpenMD::UreyBradleyBend::calcForce
virtual void calcForce(RealType &angle, bool doParticlePot)
Definition
UreyBradleyBend.cpp:60
OpenMD::UreyBradleyBendType
Definition
UreyBradleyBendType.hpp:67
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
primitives
UreyBradleyBend.cpp
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