OpenMD 3.2
Molecular Dynamics in the Open
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Velocitizer.hpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
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6 * modification, are permitted provided that the following conditions are met:
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9 * this list of conditions and the following disclaimer.
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12 * this list of conditions and the following disclaimer in the documentation
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17 * this software without specific prior written permission.
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30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48#ifndef BRAINS_VELOCITIZER_HPP
49#define BRAINS_VELOCITIZER_HPP
50
51#include "brains/SimInfo.hpp"
52#include "brains/Thermo.hpp"
53#include "io/Globals.hpp"
54#include "utils/RandNumGen.hpp"
55
56namespace OpenMD {
57
58 //! Velocity-modifying routines.
59 /*
60 Provides functions that re-sample or re-scale the velocities.
61 These are particularly useful for setting initial configurations
62 to a desired temperature or re-scaling velocities to match a
63 desired energy.
64 */
65 class Velocitizer {
66 public:
67 Velocitizer(SimInfo* info);
68 virtual ~Velocitizer() = default;
69
70 /** @brief Resamples velocities and angular momenta
71 * Resamples velocities and angular momenta from a Maxwell-Boltzmann
72 * distribution.
73 * @param t : Temperature of the new distribution.
74 */
75 void randomize(RealType ct);
76
77 /** @brief Resamples charge velocities
78 * Resamples charge velocities from a Maxwell-Boltzmann
79 * distribution.
80 * @param ct : Charge temperature of the new distribution.
81 */
82 void randomizeChargeVelocity(RealType ct);
83
84 /** @brief Scales velocities and angular momenta by a scaling factor
85 * Rescales velocity (and angular momenta) by a scaling factor.
86 * @param lambda : Scaling factor (must be >= 0)
87 */
88 void scale(RealType lambda);
89
90 /** @brief Removes Center of Mass Drift Velocity
91 * Removes the center of mass drift velocity (required for accurate
92 * calculations of diffusion).
93 */
94 void removeComDrift();
95
96 /** @brief Removes Center of Mass Angular momentum
97 * Removes the center of mass angular momentum (particularly useful in
98 * non-periodic simulations).
99 */
100 void removeAngularDrift();
101
102 private:
103 SimInfo* info_ {nullptr};
104 Thermo thermo_;
105 Globals* globals_;
106 Utils::RandNumGenPtr randNumGen_ {nullptr};
107 };
108} // namespace OpenMD
109
110#endif // BRAINS_VELOCITIZER_HPP
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:96
void randomize(RealType ct)
Resamples velocities and angular momenta Resamples velocities and angular momenta from a Maxwell-Bolt...
void randomizeChargeVelocity(RealType ct)
Resamples charge velocities Resamples charge velocities from a Maxwell-Boltzmann distribution.
void removeComDrift()
Removes Center of Mass Drift Velocity Removes the center of mass drift velocity (required for accurat...
void scale(RealType lambda)
Scales velocities and angular momenta by a scaling factor Rescales velocity (and angular momenta) by ...
void removeAngularDrift()
Removes Center of Mass Angular momentum Removes the center of mass angular momentum (particularly use...
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.