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Velocitizer.hpp
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/*
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* Copyright (c) 2004-present, The University of Notre Dame. All rights
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* reserved.
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*
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:
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*
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* 1. Redistributions of source code must retain the above copyright notice,
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* this list of conditions and the following disclaimer.
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*
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* 2. Redistributions in binary form must reproduce the above copyright notice,
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* this list of conditions and the following disclaimer in the documentation
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* and/or other materials provided with the distribution.
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*
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* 3. Neither the name of the copyright holder nor the names of its
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* contributors may be used to endorse or promote products derived from
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* this software without specific prior written permission.
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*
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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* POSSIBILITY OF SUCH DAMAGE.
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*
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* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
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* research, please cite the following paper when you publish your work:
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*
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* [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
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*
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* Good starting points for code and simulation methodology are:
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*
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* [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
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* [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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* [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
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* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
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* [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
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* [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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* [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
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* [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
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*/
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#ifndef BRAINS_VELOCITIZER_HPP
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#define BRAINS_VELOCITIZER_HPP
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#include "
brains/SimInfo.hpp
"
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#include "brains/Thermo.hpp"
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#include "io/Globals.hpp"
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#include "utils/RandNumGen.hpp"
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namespace
OpenMD
{
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//! Velocity-modifying routines.
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/*
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Provides functions that re-sample or re-scale the velocities.
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These are particularly useful for setting initial configurations
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to a desired temperature or re-scaling velocities to match a
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desired energy.
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*/
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class
Velocitizer {
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public
:
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Velocitizer(
SimInfo
* info);
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virtual
~Velocitizer() =
default
;
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/** @brief Resamples velocities and angular momenta
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* Resamples velocities and angular momenta from a Maxwell-Boltzmann
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* distribution.
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* @param t : Temperature of the new distribution.
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*/
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void
randomize
(RealType ct);
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/** @brief Resamples charge velocities
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* Resamples charge velocities from a Maxwell-Boltzmann
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* distribution.
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* @param ct : Charge temperature of the new distribution.
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*/
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void
randomizeChargeVelocity
(RealType ct);
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/** @brief Scales velocities and angular momenta by a scaling factor
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* Rescales velocity (and angular momenta) by a scaling factor.
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* @param lambda : Scaling factor (must be >= 0)
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*/
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void
scale
(RealType lambda);
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/** @brief Removes Center of Mass Drift Velocity
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* Removes the center of mass drift velocity (required for accurate
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* calculations of diffusion).
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*/
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void
removeComDrift
();
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/** @brief Removes Center of Mass Angular momentum
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* Removes the center of mass angular momentum (particularly useful in
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* non-periodic simulations).
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*/
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void
removeAngularDrift
();
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private
:
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SimInfo
* info_ {
nullptr
};
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Thermo
thermo_;
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Globals
* globals_;
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Utils::RandNumGenPtr randNumGen_ {
nullptr
};
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};
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}
// namespace OpenMD
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#endif
// BRAINS_VELOCITIZER_HPP
SimInfo.hpp
OpenMD::Globals
Definition
Globals.hpp:70
OpenMD::SimInfo
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition
SimInfo.hpp:96
OpenMD::Thermo
Definition
Thermo.hpp:57
OpenMD::Velocitizer::randomize
void randomize(RealType ct)
Resamples velocities and angular momenta Resamples velocities and angular momenta from a Maxwell-Bolt...
Definition
Velocitizer.cpp:102
OpenMD::Velocitizer::randomizeChargeVelocity
void randomizeChargeVelocity(RealType ct)
Resamples charge velocities Resamples charge velocities from a Maxwell-Boltzmann distribution.
Definition
Velocitizer.cpp:176
OpenMD::Velocitizer::removeComDrift
void removeComDrift()
Removes Center of Mass Drift Velocity Removes the center of mass drift velocity (required for accurat...
Definition
Velocitizer.cpp:249
OpenMD::Velocitizer::scale
void scale(RealType lambda)
Scales velocities and angular momenta by a scaling factor Rescales velocity (and angular momenta) by ...
Definition
Velocitizer.cpp:68
OpenMD::Velocitizer::removeAngularDrift
void removeAngularDrift()
Removes Center of Mass Angular momentum Removes the center of mass angular momentum (particularly use...
Definition
Velocitizer.cpp:273
OpenMD
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.
Definition
ActionCorrFunc.cpp:63
brains
Velocitizer.hpp
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