OpenMD 3.1
Molecular Dynamics in the Open
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This is the complete list of members for OpenMD::HBondJumpR, including all inherited members.
acceptor_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
acceptorStartFrame_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
calcCorrVal(int, int, int, int) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
calcCorrVal(int, int) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
common_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
computeFrame(int istep) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protectedvirtual |
computeProperty1(int) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty1(int, Molecule *) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty1(int, StuntDouble *) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty1(int, Bond *) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty2(int) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty2(int, Molecule *) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty2(int, StuntDouble *) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
computeProperty2(int, Bond *) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | inlineprotectedvirtual |
correlation() (defined in OpenMD::HBondJumpR) | OpenMD::HBondJumpR | virtual |
DynamicProperty() (defined in OpenMD::DynamicProperty) | OpenMD::DynamicProperty | inline |
findHBonds(int frame) (defined in OpenMD::HBondJumpR) | OpenMD::HBondJumpR | virtual |
getOutputFileName() const (defined in OpenMD::DynamicProperty) | OpenMD::DynamicProperty | inline |
GIDtoH_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
HBondJump(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2, double OOCut, double thetaCut, double OHCut) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | |
HBondJumpR(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2, const std::string &sele3, double OOCut, RealType thetaCut, RealType OHCut, RealType len, int nRbins) (defined in OpenMD::HBondJumpR) | OpenMD::HBondJumpR | |
hydrogen_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
isHBond(Vector3d donorPos, Vector3d hPos, Vector3d acceptorPos) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
lastAcceptor_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
OHCut_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
OOCut_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
outputFilename_ (defined in OpenMD::DynamicProperty) | OpenMD::DynamicProperty | protected |
postCorrelate() (defined in OpenMD::HBondJumpR) | OpenMD::HBondJumpR | virtual |
processNonOverlapping(int frame, SelectionManager &sman1, SelectionManager &sman2) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
processOverlapping(int frame, SelectionManager &sman) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
registerHydrogen(int frame, int hIndex) (defined in OpenMD::HBondJumpR) | OpenMD::HBondJumpR | virtual |
registerHydrogenBond(int frame, int index, int hIndex, int aIndex) (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
sele1_minus_common_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
sele2_minus_common_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
selected_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
setOutputName(const std::string &filename) (defined in OpenMD::DynamicProperty) | OpenMD::DynamicProperty | inline |
thetaCut_ (defined in OpenMD::HBondJump) | OpenMD::HBondJump | protected |
writeCorrelate() (defined in OpenMD::HBondJumpR) | OpenMD::HBondJumpR | virtual |
~DynamicProperty()=default (defined in OpenMD::DynamicProperty) | OpenMD::DynamicProperty | virtual |