OpenMD 3.1
Molecular Dynamics in the Open
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OpenMD::HBondJumpR Member List

This is the complete list of members for OpenMD::HBondJumpR, including all inherited members.

acceptor_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
acceptorStartFrame_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
calcCorrVal(int, int, int, int) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
calcCorrVal(int, int) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
common_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
computeFrame(int istep) (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotectedvirtual
computeProperty1(int) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty1(int, Molecule *) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty1(int, StuntDouble *) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty1(int, Bond *) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty2(int) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty2(int, Molecule *) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty2(int, StuntDouble *) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
computeProperty2(int, Bond *) (defined in OpenMD::HBondJump)OpenMD::HBondJumpinlineprotectedvirtual
correlation() (defined in OpenMD::HBondJumpR)OpenMD::HBondJumpRvirtual
DynamicProperty() (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
findHBonds(int frame) (defined in OpenMD::HBondJumpR)OpenMD::HBondJumpRvirtual
getOutputFileName() const (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
GIDtoH_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
HBondJump(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2, double OOCut, double thetaCut, double OHCut) (defined in OpenMD::HBondJump)OpenMD::HBondJump
HBondJumpR(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2, const std::string &sele3, double OOCut, RealType thetaCut, RealType OHCut, RealType len, int nRbins) (defined in OpenMD::HBondJumpR)OpenMD::HBondJumpR
hydrogen_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
isHBond(Vector3d donorPos, Vector3d hPos, Vector3d acceptorPos) (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
lastAcceptor_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
OHCut_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
OOCut_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
outputFilename_ (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyprotected
postCorrelate() (defined in OpenMD::HBondJumpR)OpenMD::HBondJumpRvirtual
processNonOverlapping(int frame, SelectionManager &sman1, SelectionManager &sman2) (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
processOverlapping(int frame, SelectionManager &sman) (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
registerHydrogen(int frame, int hIndex) (defined in OpenMD::HBondJumpR)OpenMD::HBondJumpRvirtual
registerHydrogenBond(int frame, int index, int hIndex, int aIndex) (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
sele1_minus_common_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
sele2_minus_common_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
selected_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
setOutputName(const std::string &filename) (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
thetaCut_ (defined in OpenMD::HBondJump)OpenMD::HBondJumpprotected
writeCorrelate() (defined in OpenMD::HBondJumpR)OpenMD::HBondJumpRvirtual
~DynamicProperty()=default (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyvirtual