OpenMD 3.1
Molecular Dynamics in the Open
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OpenMD::MoleculeCCF< T > Member List

This is the complete list of members for OpenMD::MoleculeCCF< T >, including all inherited members.

autoCorrFunc_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
autoCorrFunc_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
calcCorrVal(int frame1, int frame2, int id1, int id2)=0 (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >protectedpure virtual
calcCorrVal(int, int) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
computeFrame(int frame) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
computeFrame(int frame) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
computeProperty1(int frame, Molecule *mol)=0 (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >protectedpure virtual
computeProperty1(int) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
computeProperty1(int, StuntDouble *) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
computeProperty1(int, Bond *) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
computeProperty2(int frame, Molecule *mol)=0 (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >protectedpure virtual
computeProperty2(int) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
computeProperty2(int, StuntDouble *) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
computeProperty2(int, Bond *) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >inlineprotectedvirtual
correlateFrames(int frame1, int frame2, int timeBin) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
correlateFrames(int frame1, int frame2, int timeBin) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
correlation() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
correlation() (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
corrFuncType_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
corrFuncType_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
count_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
count_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
CrossCorrFunc(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2, int storageLayout) (defined in OpenMD::CrossCorrFunc< T >)OpenMD::CrossCorrFunc< T >
CrossCorrFunc(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2) (defined in OpenMD::CrossCorrFunc< T >)OpenMD::CrossCorrFunc< T >
currentSnapshot_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
currentSnapshot_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
deltaTime_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
deltaTime_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
doAtomicProperties_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
doBondProperties_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
doCorrelate() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >virtual
doCorrelate() (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >virtual
doMolecularProperties_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
doObjectProperties_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
doSystemProperties_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
dumpFilename_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
dumpFilename_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
DynamicProperty() (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
DynamicProperty() (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
evaluator1_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
evaluator1_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
evaluator2_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
evaluator2_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
getCorrFuncType() const (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >inline
getCorrFuncType() const (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >inline
getOutputFileName() const (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
getOutputFileName() const (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
histogram_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
histogram_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
info_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
info_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
labelString_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
labelString_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
MoleculeCCF(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2) (defined in OpenMD::MoleculeCCF< T >)OpenMD::MoleculeCCF< T >
MultipassCorrFunc(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2, int storageLayout) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >
nFrames_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
nFrames_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
nTimeBins_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
nTimeBins_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
outputFilename_ (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyprotected
outputFilename_ (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyprotected
paramString_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
paramString_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
postCorrelate() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
postCorrelate() (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
preCorrelate() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
preCorrelate() (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
progressBar_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
progressBar_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
reader_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
reader_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
sele1ToIndex_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
sele1ToIndex_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
sele2ToIndex_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
sele2ToIndex_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
selectionScript1_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
selectionScript1_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
selectionScript2_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
selectionScript2_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
seleMan1_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
seleMan1_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
seleMan2_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
seleMan2_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
setCorrFuncType(const std::string &type) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >inline
setCorrFuncType(const std::string &type) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >inline
setLabelString(const std::string &label) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >inline
setLabelString(const std::string &label) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >inline
setOutputName(const std::string &filename) (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
setOutputName(const std::string &filename) (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyinline
setParameterString(const std::string &params) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >inline
setParameterString(const std::string &params) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >inline
storageLayout_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
TimeCorrFunc(SimInfo *info, const std::string &filename, const std::string &sele1, const std::string &sele2) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >
times_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
times_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
uniqueSelections_ (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
uniqueSelections_ (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protected
validateSelection(SelectionManager &seleMan) (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
validateSelection(SelectionManager &seleMan) (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
writeCorrelate() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protectedvirtual
writeCorrelate() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
writeCorrelate() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >protected
writeCorrelate() (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >protectedvirtual
~DynamicProperty()=default (defined in OpenMD::DynamicProperty)OpenMD::DynamicPropertyvirtual
~MultipassCorrFunc() (defined in OpenMD::MultipassCorrFunc< T >)OpenMD::MultipassCorrFunc< T >inlinevirtual
~TimeCorrFunc() (defined in OpenMD::TimeCorrFunc< T >)OpenMD::TimeCorrFunc< T >inlinevirtual