OpenMD 3.1
Molecular Dynamics in the Open
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This is the complete list of members for OpenMD::MoleculeStamp, including all inherited members.
addAtomStamp(AtomStamp *atom) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addBendStamp(BendStamp *bend) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addBondStamp(BondStamp *bond) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addConstraintStamp(ConstraintStamp *constraint) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addCutoffGroupStamp(CutoffGroupStamp *cutoffgroup) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addFragmentStamp(FragmentStamp *fragment) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addInversionStamp(InversionStamp *inversion) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addRigidBodyStamp(RigidBodyStamp *rigidbody) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
addTorsionStamp(TorsionStamp *torsion) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
assign(const std::string &keyword, T val) (defined in OpenMD::DataHolder) | OpenMD::DataHolder | inline |
DataHolder() (defined in OpenMD::DataHolder) | OpenMD::DataHolder | inline |
deprecatedKeywords_ (defined in OpenMD::DataHolder) | OpenMD::DataHolder | protected |
getAtomStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getBendStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getBondStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getConstraintStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getCutoffGroupStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getFragmentStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getInversionStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getJointAtoms(int rb1, int rb2) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
getNAtoms() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNBends() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNBonds() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNConstraints() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNCutoffGroups() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNFreeAtoms() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNIntegrable() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNInversions() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNRigidBodies() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getNTorsions() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getRegion() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getRigidBodyStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
getTorsionStamp(int index) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
isAtomInRigidBody(int atomIndex) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
isAtomInRigidBody(int atomIndex, int &whichRigidBody, int &consAtomIndex) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
isBondInSameRigidBody(BondStamp *bond) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
MoleculeStamp() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | |
parameters_ (defined in OpenMD::DataHolder) | OpenMD::DataHolder | protected |
ParamMap typedef (defined in OpenMD::DataHolder) | OpenMD::DataHolder | protected |
setRegion(int r) (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | inline |
validate() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | virtual |
~DataHolder()=default (defined in OpenMD::DataHolder) | OpenMD::DataHolder | virtual |
~MoleculeStamp() (defined in OpenMD::MoleculeStamp) | OpenMD::MoleculeStamp | virtual |