OpenMD 3.2
Molecular Dynamics in the Open
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GayBerneAdapter.hpp
1/*
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32 * research, please cite the following paper when you publish your work:
33 *
34 * [1] Drisko et al., J. Open Source Softw. 9, 7004 (2024).
35 *
36 * Good starting points for code and simulation methodology are:
37 *
38 * [2] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
39 * [3] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
40 * [4] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
41 * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
42 * [6] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
43 * [7] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
44 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
45 * [9] Drisko & Gezelter, J. Chem. Theory Comput. 20, 4986-4997 (2024).
46 */
47
48#ifndef TYPES_GAYBERNEADAPTER_HPP
49#define TYPES_GAYBERNEADAPTER_HPP
50
51#include "types/AtomType.hpp"
52#include "utils/GenericData.hpp"
53
54using namespace std;
55namespace OpenMD {
56
57 string const GBtypeID = "GB";
58
60 RealType GB_d;
61 RealType GB_l;
62 RealType GB_eps_X;
63 RealType GB_eps_S;
64 RealType GB_eps_E;
65 RealType GB_dw;
66 };
67 using GBAtypeData = SimpleTypeData<GBAtypeParameters>;
68
69 class GayBerneAdapter {
70 public:
71 GayBerneAdapter(AtomType* AT) { at_ = AT; };
72
73 void makeGayBerne(RealType d, RealType l, RealType eps_X, RealType eps_S,
74 RealType eps_E, RealType dw);
75
76 bool isGayBerne();
77 RealType getD();
78 RealType getL();
79 RealType getEpsX();
80 RealType getEpsS();
81 RealType getEpsE();
82 RealType getDw();
83
84 private:
85 AtomType* at_;
86 GBAtypeParameters getGayBerneParam();
87 };
88} // namespace OpenMD
89
90#endif
AtomType is what OpenMD looks to for unchanging data about an atom.
Definition AtomType.hpp:69
SimpleTypeData class is a POD repository class.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.