OpenMD 3.1
Molecular Dynamics in the Open
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NonBondedInteractionsSectionParser.hpp
1/*
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32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef IO_NONBONDEDINTERACTIONSSECTIONPARSER_HPP
46#define IO_NONBONDEDINTERACTIONSSECTIONPARSER_HPP
47
48#include <map>
49
50#include "io/ForceFieldOptions.hpp"
51#include "io/SectionParser.hpp"
52
53namespace OpenMD {
54
56 public:
58
59 private:
60 enum NonBondedInteractionTypeEnum {
61 ShiftedMorse,
62 LennardJones,
63 RepulsiveMorse,
65 Mie,
66 MAW,
68 EAMTable,
69 EAMZhou,
70 EAMOxides,
72 Unknown
73 };
74
75 void parseLine(ForceField& ff, const std::string& line, int lineNo);
76
77 NonBondedInteractionTypeEnum getNonBondedInteractionTypeEnum(
78 const std::string& str);
79
80 std::map<std::string, NonBondedInteractionTypeEnum> stringToEnumMap_;
81 ForceFieldOptions& options_;
82 RealType meus_; //!< Metallic energy enit scaling
83 RealType eus_; //!< Energy unit scaling
84 RealType dus_; //!< Distance unit scaling
85 };
86} // namespace OpenMD
87
88#endif
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.