OpenMD 3.1
Molecular Dynamics in the Open
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UFFAdapter.hpp
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34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef TYPES_UFFADAPTER_HPP
46#define TYPES_UFFADAPTER_HPP
47
48#include "types/AtomType.hpp"
49#include "utils/GenericData.hpp"
50
51using namespace std;
52namespace OpenMD {
53
54 string const UFFtypeID = "UFF";
55
57 RealType r1;
58 RealType theta0;
59 RealType x1;
60 RealType D1;
61 RealType zeta;
62 RealType Z1;
63 RealType Vi;
64 RealType Uj;
65 RealType Xi;
66 RealType Hard;
67 RealType Radius;
68 };
69
71
72 class UFFAdapter {
73 public:
74 UFFAdapter(AtomType* AT) { at_ = AT; };
75
76 void makeUFF(RealType r1, RealType theta0, RealType x1, RealType D1,
77 RealType zeta, RealType Z1, RealType Vi, RealType Uj,
78 RealType Xi, RealType Hard, RealType Radius);
79
80 bool isUFF();
81 RealType getR1();
82 RealType getTheta0();
83 RealType getX1();
84 RealType getD1();
85 RealType getZeta();
86 RealType getZ1();
87 RealType getVi();
88 RealType getUj();
89 RealType getXi();
90 RealType getHard();
91 RealType getRadius();
92
93 private:
94 AtomType* at_;
95 UFFAtypeParameters getUFFParam();
96 };
97} // namespace OpenMD
98
99#endif
AtomType is what OpenMD looks to for unchanging data about an atom.
Definition AtomType.hpp:66
SimpleTypeData class is a POD repository class.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.