OpenMD::Atom Member List

This is the complete list of members for OpenMD::Atom, including all inherited members.

accept(BaseVisitor *v)	OpenMD::Atom	virtual
accept(BaseVisitor *v)	OpenMD::Atom	virtual
addDensity(RealType dens)	OpenMD::StuntDouble	inline
addDensity(RealType dens, int snapshotNo)	OpenMD::StuntDouble	inline
addElectricField(const Vector3d &eField)	OpenMD::StuntDouble	inline
addElectricField(const Vector3d &eField, int snapshotNo)	OpenMD::StuntDouble	inline
addFlucQFrc(RealType cfrc)	OpenMD::StuntDouble	inline
addFlucQFrc(RealType cfrc, int snapshotNo)	OpenMD::StuntDouble	inline
addFlucQPos(RealType charge)	OpenMD::StuntDouble	inline
addFlucQPos(RealType charge, int snapshotNo)	OpenMD::StuntDouble	inline
addFlucQVel(RealType cvel)	OpenMD::StuntDouble	inline
addFlucQVel(RealType cvel, int snapshotNo)	OpenMD::StuntDouble	inline
addFrc(const Vector3d &frc)	OpenMD::StuntDouble	inline
addFrc(const Vector3d &frc, int snapshotNo)	OpenMD::StuntDouble	inline
addParticlePot(const RealType &particlePot)	OpenMD::StuntDouble	inline
addParticlePot(const RealType &particlePot, int snapshotNo)	OpenMD::StuntDouble	inline
addPrevDensity(RealType dens)	OpenMD::StuntDouble	inline
addPrevElectricField(const Vector3d &eField)	OpenMD::StuntDouble	inline
addPrevFlucQFrc(RealType cfrc)	OpenMD::StuntDouble	inline
addPrevFlucQPos(RealType charge)	OpenMD::StuntDouble	inline
addPrevFlucQVel(RealType cvel)	OpenMD::StuntDouble	inline
addPrevFrc(const Vector3d &frc)	OpenMD::StuntDouble	inline
addPrevParticlePot(const RealType &particlePot)	OpenMD::StuntDouble	inline
addPrevSitePotential(RealType spot)	OpenMD::StuntDouble	inline
addPrevTrq(const Vector3d &trq)	OpenMD::StuntDouble	inline
addProperty(std::shared_ptr< GenericData > genData)	OpenMD::StuntDouble
addSitePotential(RealType spot)	OpenMD::StuntDouble	inline
addSitePotential(RealType spot, int snapshotNo)	OpenMD::StuntDouble	inline
addTrq(const Vector3d &trq)	OpenMD::StuntDouble	inline
addTrq(const Vector3d &trq, int snapshotNo)	OpenMD::StuntDouble	inline
Atom(AtomType *at) (defined in OpenMD::Atom)	OpenMD::Atom
Atom(AtomType *at) (defined in OpenMD::Atom)	OpenMD::Atom
atomType_ (defined in OpenMD::Atom)	OpenMD::Atom	protected
body2Lab(const Vector3d &v)	OpenMD::StuntDouble	inline
body2Lab(const Vector3d &v, int frame) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	inline
chargeMass_ (defined in OpenMD::Atom)	OpenMD::Atom	protected
combineForcesAndTorques(Snapshot *snapA, Snapshot *snapB, RealType multA, RealType multB)	OpenMD::StuntDouble
freeze()	OpenMD::StuntDouble	inline
getA()	OpenMD::StuntDouble	inline
getA(int snapshotNo)	OpenMD::StuntDouble	inline
getAtomType()	OpenMD::Atom	inline
getAtomType()	OpenMD::Atom	inline
getChargeMass() (defined in OpenMD::Atom)	OpenMD::Atom	inline
getChargeMass() (defined in OpenMD::Atom)	OpenMD::Atom	inline
getCOM()	OpenMD::StuntDouble	inline
getCOM(int snapshotNo)	OpenMD::StuntDouble	inline
getCOMvel()	OpenMD::StuntDouble	inline
getCOMvel(int snapshotNo)	OpenMD::StuntDouble	inline
getCOMw()	OpenMD::StuntDouble	inline
getCOMw(int snapshotNo)	OpenMD::StuntDouble	inline
getDensity()	OpenMD::StuntDouble	inline
getDensity(int snapshotNo)	OpenMD::StuntDouble	inline
getDipole()	OpenMD::StuntDouble	inline
getDipole(int snapshotNo)	OpenMD::StuntDouble	inline
getElectricField()	OpenMD::StuntDouble	inline
getElectricField(int snapshotNo)	OpenMD::StuntDouble	inline
getEuler()	OpenMD::StuntDouble	inline
getEuler(int snapshotNo)	OpenMD::StuntDouble	inline
getFlucQFrc()	OpenMD::StuntDouble	inline
getFlucQFrc(int snapshotNo)	OpenMD::StuntDouble	inline
getFlucQPos()	OpenMD::StuntDouble	inline
getFlucQPos(int snapshotNo)	OpenMD::StuntDouble	inline
getFlucQVel()	OpenMD::StuntDouble	inline
getFlucQVel(int snapshotNo)	OpenMD::StuntDouble	inline
getFrc()	OpenMD::StuntDouble	inline
getFrc(int snapshotNo)	OpenMD::StuntDouble	inline
getGlobalIndex()	OpenMD::StuntDouble	inline
getGlobalIntegrableObjectIndex() (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	inline
getGrad()	OpenMD::Atom	virtual
getGrad()	OpenMD::Atom	virtual
getHybridization() const	OpenMD::Atom	inline
getI()	OpenMD::Atom	virtual
getI()	OpenMD::Atom	virtual
getIdent() (defined in OpenMD::Atom)	OpenMD::Atom	inline
getIdent() (defined in OpenMD::Atom)	OpenMD::Atom	inline
getJ()	OpenMD::StuntDouble	inline
getJ(int snapshotNo)	OpenMD::StuntDouble	inline
getLocalIndex()	OpenMD::StuntDouble	inline
getMass()	OpenMD::StuntDouble	inline
getParticlePot()	OpenMD::StuntDouble	inline
getParticlePot(int snapshotNo)	OpenMD::StuntDouble	inline
getPos()	OpenMD::StuntDouble	inline
getPos(int snapshotNo)	OpenMD::StuntDouble	inline
getPrevA()	OpenMD::StuntDouble	inline
getPrevDensity()	OpenMD::StuntDouble	inline
getPrevDipole()	OpenMD::StuntDouble	inline
getPrevElectricField()	OpenMD::StuntDouble	inline
getPrevEuler()	OpenMD::StuntDouble	inline
getPrevFlucQFrc()	OpenMD::StuntDouble	inline
getPrevFlucQPos()	OpenMD::StuntDouble	inline
getPrevFlucQVel()	OpenMD::StuntDouble	inline
getPrevFrc()	OpenMD::StuntDouble	inline
getPrevJ()	OpenMD::StuntDouble	inline
getPrevParticlePot()	OpenMD::StuntDouble	inline
getPrevPos()	OpenMD::StuntDouble	inline
getPrevQ()	OpenMD::StuntDouble	inline
getPrevQuadrupole()	OpenMD::StuntDouble	inline
getPrevSitePotential()	OpenMD::StuntDouble	inline
getPrevTrq()	OpenMD::StuntDouble	inline
getPrevVel()	OpenMD::StuntDouble	inline
getProperties()	OpenMD::StuntDouble
getPropertyByName(const std::string &propName)	OpenMD::StuntDouble
getPropertyNames()	OpenMD::StuntDouble
getQ()	OpenMD::StuntDouble	inline
getQ(int snapshotNo)	OpenMD::StuntDouble	inline
getQuadrupole()	OpenMD::StuntDouble	inline
getQuadrupole(int snapshotNo)	OpenMD::StuntDouble	inline
getSitePotential()	OpenMD::StuntDouble	inline
getSitePotential(int snapshotNo)	OpenMD::StuntDouble	inline
getTrq()	OpenMD::StuntDouble	inline
getTrq(int snapshotNo)	OpenMD::StuntDouble	inline
getType()	OpenMD::Atom	inlinevirtual
getType()	OpenMD::Atom	inlinevirtual
getVel()	OpenMD::StuntDouble	inline
getVel(int snapshotNo)	OpenMD::StuntDouble	inline
getVel(Snapshot *snapshot) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	inline
globalIndex_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
globalIntegrableObjectIndex_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
hyb_ (defined in OpenMD::Atom)	OpenMD::Atom	protected
isAtom()	OpenMD::StuntDouble	inline
isCharge() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isCharge() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isDipole() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isDipole() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isDirectional() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isDirectional() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isDirectionalAtom()	OpenMD::StuntDouble	inline
isFluctuatingCharge() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isFluctuatingCharge() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isGayBerne() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isGayBerne() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isLinear()	OpenMD::StuntDouble	inline
isMetal() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isMetal() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isMultipole() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isMultipole() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isRigidBody()	OpenMD::StuntDouble	inline
isShape() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isShape() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isSticky() (defined in OpenMD::Atom)	OpenMD::Atom	inline
isSticky() (defined in OpenMD::Atom)	OpenMD::Atom	inline
lab2Body(const Vector3d &v)	OpenMD::StuntDouble	inline
lab2Body(const Vector3d &v, int frame) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	inline
linear_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
linearAxis()	OpenMD::StuntDouble	inline
linearAxis_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
localIndex_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
mass_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
ObjectType enum name (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble
objType_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
operator=(const StuntDouble &sd) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
otAtom enum value (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble
otDAtom enum value (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble
otRigidBody enum value (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble
removeProperty(const std::string &propName)	OpenMD::StuntDouble
setA(const RotMat3x3d &a)	OpenMD::StuntDouble	inlinevirtual
setA(const RotMat3x3d &a, int snapshotNo)	OpenMD::StuntDouble	inlinevirtual
setChargeMass(RealType cm) (defined in OpenMD::Atom)	OpenMD::Atom	inline
setChargeMass(RealType cm) (defined in OpenMD::Atom)	OpenMD::Atom	inline
setDensity(RealType dens)	OpenMD::StuntDouble	inline
setDensity(RealType dens, int snapshotNo)	OpenMD::StuntDouble	inline
setElectricField(const Vector3d &eField)	OpenMD::StuntDouble	inline
setElectricField(const Vector3d &eField, int snapshotNo)	OpenMD::StuntDouble	inline
setEuler(const Vector3d &euler)	OpenMD::StuntDouble	inline
setEuler(const Vector3d &euler, int snapshotNo)	OpenMD::StuntDouble	inline
setFlucQFrc(RealType cfrc)	OpenMD::StuntDouble	inline
setFlucQFrc(RealType cfrc, int snapshotNo)	OpenMD::StuntDouble	inline
setFlucQPos(RealType charge)	OpenMD::StuntDouble	inline
setFlucQPos(RealType charge, int snapshotNo)	OpenMD::StuntDouble	inline
setFlucQVel(RealType cvel)	OpenMD::StuntDouble	inline
setFlucQVel(RealType cvel, int snapshotNo)	OpenMD::StuntDouble	inline
setFrc(const Vector3d &frc)	OpenMD::StuntDouble	inline
setFrc(const Vector3d &frc, int snapshotNo)	OpenMD::StuntDouble	inline
setGlobalIndex(int index)	OpenMD::StuntDouble	inline
setGlobalIntegrableObjectIndex(int index) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	inline
setHybridization(HybridizationType what)	OpenMD::Atom	inline
setJ(const Vector3d &angMom)	OpenMD::StuntDouble	inline
setJ(const Vector3d &angMom, int snapshotNo)	OpenMD::StuntDouble	inline
setLocalIndex(int index)	OpenMD::StuntDouble	inline
setMass(RealType mass)	OpenMD::StuntDouble	inline
setParticlePot(const RealType &particlePot)	OpenMD::StuntDouble	inline
setParticlePot(const RealType &particlePot, int snapshotNo)	OpenMD::StuntDouble	inline
setPos(const Vector3d &pos)	OpenMD::StuntDouble	inline
setPos(const Vector3d &pos, int snapshotNo)	OpenMD::StuntDouble	inline
setPrevA(const RotMat3x3d &a)	OpenMD::StuntDouble	inlinevirtual
setPrevDensity(RealType dens)	OpenMD::StuntDouble	inline
setPrevElectricField(const Vector3d &eField)	OpenMD::StuntDouble	inline
setPrevEuler(const Vector3d &euler)	OpenMD::StuntDouble	inline
setPrevFlucQFrc(RealType cfrc)	OpenMD::StuntDouble	inline
setPrevFlucQPos(RealType charge)	OpenMD::StuntDouble	inline
setPrevFlucQVel(RealType cvel)	OpenMD::StuntDouble	inline
setPrevFrc(const Vector3d &frc)	OpenMD::StuntDouble	inline
setPrevJ(const Vector3d &angMom)	OpenMD::StuntDouble	inline
setPrevParticlePot(const RealType &particlePot)	OpenMD::StuntDouble	inline
setPrevPos(const Vector3d &pos)	OpenMD::StuntDouble	inline
setPrevQ(const Quat4d &q)	OpenMD::StuntDouble	inline
setPrevSitePotential(RealType spot)	OpenMD::StuntDouble	inline
setPrevTrq(const Vector3d &trq)	OpenMD::StuntDouble	inline
setPrevVel(const Vector3d &vel)	OpenMD::StuntDouble	inline
setQ(const Quat4d &q)	OpenMD::StuntDouble	inline
setQ(const Quat4d &q, int snapshotNo)	OpenMD::StuntDouble	inline
setSitePotential(RealType spot)	OpenMD::StuntDouble	inline
setSitePotential(RealType spot, int snapshotNo)	OpenMD::StuntDouble	inline
setSnapshotManager(SnapshotManager *sman)	OpenMD::StuntDouble	inline
setTrq(const Vector3d &trq)	OpenMD::StuntDouble	inline
setTrq(const Vector3d &trq, int snapshotNo)	OpenMD::StuntDouble	inline
setType(const std::string &)	OpenMD::StuntDouble	inlinevirtual
setVel(const Vector3d &vel)	OpenMD::StuntDouble	inline
setVel(const Vector3d &vel, int snapshotNo)	OpenMD::StuntDouble	inline
snapshotMan_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
storage_ (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
StuntDouble(ObjectType objType, DataStoragePointer storage) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
StuntDouble(const StuntDouble &sd) (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	protected
zeroForcesAndTorques()	OpenMD::StuntDouble
~StuntDouble()=default (defined in OpenMD::StuntDouble)	OpenMD::StuntDouble	virtual