OpenMD 3.1
Molecular Dynamics in the Open
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Public Member Functions | |
IcosahedralOfR (SimInfo *info, const std::string &filename, const std::string &sele, double rCut, unsigned int nbins, RealType len) | |
virtual void | collectHistogram (std::vector< RealType > q, std::vector< ComplexType > what, RealType distCOM) |
virtual void | writeOrderParameter () |
Public Member Functions inherited from OpenMD::BOPofR | |
BOPofR (SimInfo *info, const std::string &filename, const std::string &sele, double rCut, unsigned int nbins, RealType len) | |
virtual void | process () |
Public Member Functions inherited from OpenMD::StaticAnalyser | |
StaticAnalyser (SimInfo *info, const std::string &filename, unsigned int nbins) | |
void | setOutputName (const std::string &filename) |
const std::string & | getOutputFileName () const |
void | setStep (int step) |
int | getStep () const |
const std::string & | getAnalysisType () const |
void | setAnalysisType (const std::string &type) |
void | setParameterString (const std::string ¶ms) |
Additional Inherited Members | |
Protected Member Functions inherited from OpenMD::BOPofR | |
virtual void | initializeHistogram () |
Protected Member Functions inherited from OpenMD::StaticAnalyser | |
virtual void | writeOutput () |
Protected Attributes inherited from OpenMD::BOPofR | |
Snapshot * | currentSnapshot_ |
std::string | selectionScript_ |
SelectionManager | seleMan_ |
SelectionEvaluator | evaluator_ |
RealType | rCut_ |
int | frameCounter_ |
RealType | len_ |
RealType | deltaR_ |
std::map< std::pair< int, int >, int > | m2Min |
std::map< std::pair< int, int >, int > | m2Max |
std::map< std::pair< int, int >, std::vector< RealType > > | w3j |
std::vector< int > | RCount_ |
std::vector< int > | WofR_ |
std::vector< int > | QofR_ |
Protected Attributes inherited from OpenMD::StaticAnalyser | |
SimInfo * | info_ {nullptr} |
std::string | dumpFilename_ |
int | step_ |
unsigned int | nBins_ |
std::string | outputFilename_ |
std::string | analysisType_ |
std::string | paramString_ |
std::vector< OutputData > | data_ |
std::vector< AtomType * > | outputTypes_ |
Static Protected Attributes inherited from OpenMD::BOPofR | |
static const int | lMax_ = 6 |
Definition at line 90 of file BOPofR.hpp.
OpenMD::IcosahedralOfR::IcosahedralOfR | ( | SimInfo * | info, |
const std::string & | filename, | ||
const std::string & | sele, | ||
double | rCut, | ||
unsigned int | nbins, | ||
RealType | len ) |
Definition at line 284 of file BOPofR.cpp.
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virtual |
Implements OpenMD::BOPofR.
Definition at line 291 of file BOPofR.cpp.
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virtual |
Implements OpenMD::BOPofR.
Definition at line 323 of file BOPofR.cpp.