OpenMD 3.1
Molecular Dynamics in the Open
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Public Member Functions | |
NPTxyz (SimInfo *info) | |
Public Member Functions inherited from OpenMD::NPTf | |
NPTf (SimInfo *info) | |
Public Member Functions inherited from OpenMD::NPT | |
NPT (SimInfo *info) | |
int | getMaxIterationNumber () |
void | setMaxIterationNumber (int maxIter) |
RealType | getTauThermostat () |
void | setTauThermostat (RealType tt) |
RealType | getTauBarostat () |
void | setTauBarostat (RealType tb) |
RealType | getTargetTemp () |
void | setTargetTemp (RealType tt) |
RealType | getTargetPressure () |
void | setTargetPressure (RealType tp) |
RealType | getChiTolerance () |
void | setChiTolerance (RealType tol) |
RealType | getEtaTolerance () |
void | setEtaTolerance (RealType tol) |
Public Member Functions inherited from OpenMD::Integrator | |
virtual | ~Integrator () |
Default Destructor. | |
void | integrate () |
void | updateSizes () |
void | setVelocitizer (std::unique_ptr< Velocitizer > velocitizer) |
void | setFluctuatingChargePropagator (FluctuatingChargePropagator *prop) |
void | setRotationAlgorithm (RotationAlgorithm *algo) |
void | setRNEMD (std::unique_ptr< RNEMD::RNEMD > rnemd) |
Additional Inherited Members | |
Protected Member Functions inherited from OpenMD::NPT | |
virtual void | step () |
Computes an integration step from t to t+dt. | |
virtual void | doUpdateSizes () |
virtual void | resetIntegrator () |
virtual void | resetEta () |
Protected Member Functions inherited from OpenMD::VelocityVerletIntegrator | |
VelocityVerletIntegrator (SimInfo *info) | |
Protected Member Functions inherited from OpenMD::Integrator | |
Integrator (SimInfo *info) | |
virtual void | initialize () |
virtual void | preStep () |
virtual void | calcForce () |
virtual void | postStep () |
virtual void | finalize () |
void | saveConservedQuantity () |
Protected Attributes inherited from OpenMD::NPTf | |
Mat3x3d | eta |
Protected Attributes inherited from OpenMD::NPT | |
RealType | NkBT |
RealType | fkBT |
RealType | tt2 |
RealType | tb2 |
RealType | instaTemp |
RealType | instaPress |
RealType | instaVol |
RealType | targetTemp |
RealType | targetPressure |
RealType | tauThermostat |
RealType | tauBarostat |
std::vector< Vector3d > | oldPos |
std::vector< Vector3d > | oldVel |
std::vector< Vector3d > | oldJi |
RealType | etaTolerance |
pair< RealType, RealType > | thermostat |
Mat3x3d | press |
int | maxIterNum_ |
Protected Attributes inherited from OpenMD::Integrator | |
RealType | dt |
RealType | dt2 |
RealType | runTime |
RealType | sampleTime |
RealType | statusTime |
RealType | thermalTime |
RealType | resetTime |
RealType | RNEMD_exchangeTime |
RealType | currSample |
RealType | currStatus |
RealType | currThermal |
RealType | currReset |
RealType | currRNEMD |
SimInfo * | info_ {nullptr} |
Globals * | simParams {nullptr} |
ForceManager * | forceMan_ {nullptr} |
RotationAlgorithm * | rotAlgo_ {nullptr} |
FluctuatingChargePropagator * | flucQ_ {nullptr} |
Rattle * | rattle_ {nullptr} |
std::unique_ptr< Velocitizer > | velocitizer_ {nullptr} |
std::unique_ptr< RNEMD::RNEMD > | rnemd_ {nullptr} |
bool | needPotential {false} |
bool | needVirial {false} |
bool | needReset {false} |
bool | needVelocityScaling {false} |
bool | useRNEMD {false} |
RealType | targetScalingTemp |
Stats * | stats {nullptr} |
DumpWriter * | dumpWriter {nullptr} |
StatWriter * | statWriter {nullptr} |
Thermo | thermo |
Snapshot * | snap {nullptr} |
ProgressBarPtr | progressBar {nullptr} |
Definition at line 59 of file NPTxyz.hpp.
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inline |
Definition at line 61 of file NPTxyz.hpp.