OpenMD  2.5
Molecular Dynamics in the Open
Class Index
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  a  
DumpStatusFunction (OpenMD)   IntegratorCreator (OpenMD)   OrParamConstraint (OpenMD)   ShiftedMieBondType (OpenMD)   
dumpTokenWithIndex (antlr::anonymous_namespace{TokenStreamRewriteEngine.cpp})   IntegratorFactory (OpenMD)   RNEMD::OutputData (OpenMD)   ShortRangeInteraction (OpenMD)   
Accumulator (OpenMD)   DumpWriter (OpenMD)   InteractionData (OpenMD)   OutputData (OpenMD)   SimCreator (OpenMD)   
ActionCorrFunc (OpenMD)   DynamicProperty (OpenMD)   InteractionManager (OpenMD)   
  p  
SimInfo (OpenMD)   
AlphaHull (OpenMD)   DynamicRectMatrix (OpenMD)   InteractionTimeCorrFunc (OpenMD)   SimplePreprocessor   
AmberImproperTorsionType (OpenMD)   DynamicVector (OpenMD)   InteriorFunctor (OpenMD)   P2OrderParameter (OpenMD)   SimplePreprocessor (OpenMD)   
AnalyticalModel (OpenMD)   
  e  
Inversion (OpenMD)   PairList (OpenMD)   SimpleTypeData (OpenMD)   
AndParamConstraint (OpenMD)   InversionData (OpenMD)   pAngle (OpenMD)   SimSnapshotManager (OpenMD)   
AngleR (OpenMD)   EAM (OpenMD)   InversionDataSet (OpenMD)   ParallelRandNumGen (OpenMD)   SlabStatistics (OpenMD)   
ANTLRException (antlr)   EAMAdapter (OpenMD)   InversionStamp (OpenMD)   ParamConstraintFacade (OpenMD)   Snapshot (OpenMD)   
any (boost)   EAMAtomData (OpenMD)   InversionType (OpenMD)   Parameter   SnapshotManager (OpenMD)   
ApproximationModel (OpenMD)   EAMAtomTypesSectionParser (OpenMD)   InversionTypeParser (OpenMD)   ParameterBase   SpatialStatistics (OpenMD)   
ArmijoLineSearch (QuantLib)   EAMInteractionData (OpenMD)   InversionTypesSectionParser (OpenMD)   ParametersTransformation (QuantLib)   Sphere (OpenMD)   
AST (antlr)   EAMInteractionType (OpenMD)   IOException (antlr)   ParameterTraits   SphericalHarmonic (OpenMD)   
ASTArray (antlr)   EAMParameters (OpenMD)   
  k  
ParameterTraits< bool >   SquareMatrix (OpenMD)   
ASTFactory (antlr)   Eigenvalue (JAMA)   ParameterTraits< int >   SquareMatrix3 (OpenMD)   
ASTNULLType (antlr)   Electrostatic (OpenMD)   Kirkwood (OpenMD)   ParameterTraits< RealType >   SSDAtomVisitor (OpenMD)   
ASTPair (antlr)   ElectrostaticAtomData (OpenMD)   KirkwoodQuadrupoles (OpenMD)   ParameterTraits< std::pair< int, int > >   StaticAnalyser (OpenMD)   
ASTRef (antlr)   ElectrostaticInteraction (OpenMD)   
  l  
ParameterTraits< std::string >   Stats (OpenMD)   
ASTRefCount (antlr)   Element (OpenMD)   ParameterTraits< std::vector< RealType > >   Stats::StatsData (OpenMD)   
Atom (OpenMD)   ElementsTable (OpenMD)   LangevinDynamics (OpenMD)   ParameterTraits< unsigned long int >   StatusFunction (OpenMD)   
AtomData (OpenMD)   Ellipsoid (OpenMD)   LangevinHullDynamics (OpenMD)   Parser (antlr)   StatWriter (OpenMD)   
AtomInfo (OpenMD)   EndCriteria (QuantLib)   LangevinHullForceManager (OpenMD)   ParserInputState (antlr)   SteepestDescent (QuantLib)   
AtomNameVisitor (OpenMD)   EnergyCorrFunc (OpenMD)   Lattice (OpenMD)   ParticleTimeCorrFunc (OpenMD)   Sticky (OpenMD)   
AtomStamp (OpenMD)   EqualConstraint (OpenMD)   LatticeBuilder (OpenMD)   Perturbation (OpenMD)   StickyAdapter (OpenMD)   
AtomType (OpenMD)   EqualIgnoreCaseConstraint (OpenMD)   LatticeCreator (OpenMD)   any::placeholder (boost)   StickyAtomTypesSectionParser (OpenMD)   
AtomTypesSectionParser (OpenMD)   errorStruct   LatticeFactory (OpenMD)   Plan (OpenMD)   StickyAtypeParameters (OpenMD)   
AutoCorrFunc (OpenMD)   EvenConstraint (OpenMD)   LDForceManager (OpenMD)   PolarizableAdapter (OpenMD)   StickyInteractionData (OpenMD)   
  b  
TokenStreamRewriteEngine::executeOperation (antlr)   LegendreCorrFunc (OpenMD)   PolarizableAtomTypesSectionParser (OpenMD)   StickyPowerAtomTypesSectionParser (OpenMD)   
ExteriorFunctor (OpenMD)   LegendreCorrFuncZ (OpenMD)   PolarizableAtypeParameters (OpenMD)   STLContainerTypeData   
bad_any_cast (boost)   
  f  
LegendrePolynomial (OpenMD)   Polynomial (OpenMD)   StressCorrFunc (OpenMD)   
BaseAccumulator (OpenMD)   LennardJonesAdapter (OpenMD)   PolynomialBendType (OpenMD)   StringTokenizer (OpenMD)   
BaseAST (antlr)   FCCLattice (OpenMD)   LennardJonesAtomTypesSectionParser (OpenMD)   PolynomialBondType (OpenMD)   StuntDouble (OpenMD)   
BaseAtomTypesSectionParser (OpenMD)   FCCOfR (OpenMD)   LennardJonesInteractionType (OpenMD)   PolynomialInversionType (OpenMD)   SurfaceDiffusion (OpenMD)   
BaseAtomVisitor (OpenMD)   Field (OpenMD)   LessThanConstraint (OpenMD)   PolynomialTorsionType (OpenMD)   SuttonChenAdapter (OpenMD)   
BaseRigidBodyVisitor (OpenMD)   FilenameObserver   LessThanOrEqualToConstraint (OpenMD)   PositiveConstraint (QuantLib)   SVD (JAMA)   
BaseVisitor (OpenMD)   FixedBondType (OpenMD)   LessThanPeriodicityFunctor (OpenMD)   PositiveConstraint (OpenMD)   SwitchingFunction (OpenMD)   
basic_teebuf (OpenMD)   FixedChargeAdapter (OpenMD)   LexerInputState (antlr)   PotDiff (OpenMD)   SystemDecomposition (OpenMD)   
BeadLattice (OpenMD)   FixedChargeAtypeParameters (OpenMD)   line_list   PotentialEnergyObjectiveFunction (OpenMD)   SystemDipoleCorrFunc (OpenMD)   
BeadModel (OpenMD)   FluctuatingAtypeParameters (OpenMD)   LineSearch (QuantLib)   PotVecAccumulator (OpenMD)   
  t  
BeadParam (OpenMD)   FluctuatingChargeAdapter (OpenMD)   LineSearchBasedMethod (QuantLib)   PredAndFunctor (OpenMD)   
Bend (OpenMD)   FluctuatingChargeAtomData (OpenMD)   LipidHeadVisitor (OpenMD)   PredFacade (OpenMD)   TetrahedralityHBMatrix (OpenMD)   
BendData (OpenMD)   FluctuatingChargeAtomTypesSectionParser (OpenMD)   LipidTransVisitor (OpenMD)   PredNotFunctor (OpenMD)   TetrahedralityParam (OpenMD)   
BendDataSet (OpenMD)   FluctuatingChargeConstraints (OpenMD)   LJ (OpenMD)   PredOrFunctor (OpenMD)   TetrahedralityParamDens (OpenMD)   
BendStamp (OpenMD)   FluctuatingChargeForces (OpenMD)   LJAtypeParameters (OpenMD)   PrepareVisitor (OpenMD)   TetrahedralityParamXYZ (OpenMD)   
BendType (OpenMD)   FluctuatingChargeLangevin (OpenMD)   LJInteractionData (OpenMD)   Problem (QuantLib)   TetrahedralityParamZ (OpenMD)   
BendTypeParser (OpenMD)   FluctuatingChargeNVE (OpenMD)   LLkParser (antlr)   ProgressBar (OpenMD)   Thermo (OpenMD)   
BendTypesSectionParser (OpenMD)   FluctuatingChargeNVT (OpenMD)   LocalIndexManager (OpenMD)   PropertyMap (OpenMD)   ThermoIntegrationForceManager (OpenMD)   
BFGS (QuantLib)   FluctuatingChargeObjectiveFunction (OpenMD)   logical_xor (OpenMD)   
  q  
ThetaCorrFunc (OpenMD)   
BitSet (antlr)   FluctuatingChargeParameters (OpenMD)   
  m  
TimeCorrFunc (OpenMD)   
BlockSnapshotManager (OpenMD)   FluctuatingChargePropagator (OpenMD)   QuarticBendType (OpenMD)   to_bool (OpenMD)   
Bond (OpenMD)   ForceAutoCorrFunc (OpenMD)   MatrixAccumulator (OpenMD)   QuarticBondType (OpenMD)   Token (antlr)   
BondAngleDistribution (OpenMD)   ForceDecomposition (OpenMD)   MAW (OpenMD)   QuarticTorsionType (OpenMD)   Token (OpenMD)   
BondCorrFunc (OpenMD)   ForceField (OpenMD)   MAWInteractionData (OpenMD)   Quaternion (OpenMD)   TokenBuffer (antlr)   
BondOrderParameter (OpenMD)   ForceFieldOptions (OpenMD)   MAWInteractionType (OpenMD)   
  r  
TokenMap (OpenMD)   
BondStamp (OpenMD)   ForceManager (OpenMD)   MDLexer   TokenRef (antlr)   
BondType (OpenMD)   ForceMatrixDecomposition (OpenMD)   MDParser   RadialDistrFunc (OpenMD)   TokenRefCount (antlr)   
BondTypeParser (OpenMD)   ForTorCorrFunc (OpenMD)   MDTreeParser   RandNumGen (OpenMD)   TokenStream (antlr)   
BondTypesSectionParser (OpenMD)   FragmentStamp (OpenMD)   MemoryUtils (OpenMD)   Rattle (OpenMD)   TokenStreamBasicFilter (antlr)   
BOPofR (OpenMD)   FrameData (OpenMD)   MetallicInteraction (OpenMD)   RBCOMVisitor (OpenMD)   TokenStreamException (antlr)   
BoundaryConstraint (QuantLib)   FrameTimeCorrFunc (OpenMD)   Mie (OpenMD)   RCorrFunc (OpenMD)   TokenStreamHiddenTokenFilter (antlr)   
Buckingham (OpenMD)   FreqFlucCorrFunc (OpenMD)   MieInteractionData (OpenMD)   RCorrFuncR (OpenMD)   TokenStreamIOException (antlr)   
BuckinghamInteractionData (OpenMD)   FromRangeFunctor (OpenMD)   MieInteractionType (OpenMD)   RCorrFuncZ (OpenMD)   TokenStreamRecognitionException (antlr)   
BuckinghamInteractionType (OpenMD)   FuncflParameters (OpenMD)   MinimizerParameters (OpenMD)   RealSphericalHarmonic (OpenMD)   TokenStreamRetryException (antlr)   
  c  
  g  
MismatchedCharException (antlr)   RealSymmetricTridiagonal (OpenMD)   TokenStreamRewriteEngine (antlr)   
MismatchedTokenException (antlr)   RecognitionException (antlr)   TokenStreamSelector (antlr)   
CenterOfMass (OpenMD)   GayBerneAdapter (OpenMD)   MolecularRestraint (OpenMD)   RectMatrix (OpenMD)   TokenStreamRewriteEngine::tokenToStream (antlr)   
CharBuffer (antlr)   GayBerneAtomTypesSectionParser (OpenMD)   Molecule (OpenMD)   RefCount::Ref (antlr)   TokenWithIndex (antlr)   
CharClassification (OpenMD)   GB (OpenMD)   MoleculeCreator (OpenMD)   RefCount (antlr)   toLowerFunctor (OpenMD)   
ChargeAtomTypesSectionParser (OpenMD)   GBAtypeParameters (OpenMD)   MoleculeStamp (OpenMD)   RegularCuboctahedron (OpenMD)   TorForCorrFunc (OpenMD)   
ChargeField (OpenMD)   GBheadVisitor (OpenMD)   MoLocator (OpenMD)   RegularDecahedron (OpenMD)   TorqueAutoCorrFunc (OpenMD)   
CharInputBuffer (antlr)   GBInteractionData (OpenMD)   MomAngMomCorrFunc (OpenMD)   ReplacementVisitor (OpenMD)   Torsion (OpenMD)   
CharmmTorsionParameter (OpenMD)   GBtailVisitor (OpenMD)   MomentumCorrFunc (OpenMD)   TokenStreamRewriteEngine::ReplaceOp (antlr)   TorsionData (OpenMD)   
CharmmTorsionType (OpenMD)   GCN (OpenMD)   Morse (OpenMD)   ReplicateVisitor (OpenMD)   TorsionDataSet (OpenMD)   
CharScanner (antlr)   GCNSeq (OpenMD)   MorseBondType (OpenMD)   RepulsivePower (OpenMD)   TorsionStamp (OpenMD)   
CharScannerLiteralsLess (antlr)   generic_list   MorseInteractionData (OpenMD)   RepulsivePowerInteractionType (OpenMD)   TorsionType (OpenMD)   
CharStreamException (antlr)   generic_value   MorseInteractionType (OpenMD)   Restraint (OpenMD)   TorsionTypeParser (OpenMD)   
CharStreamIOException (antlr)   GenericData (OpenMD)   MPITraits (OpenMD)   RestraintForceManager (OpenMD)   TorsionTypesSectionParser (OpenMD)   
ChebyshevT (OpenMD)   GenericFactory (OpenMD)   MPITraits< RectMatrix< T, R, C > > (OpenMD)   RestraintStamp (OpenMD)   toUpperFunctor (OpenMD)   
ChebyshevU (OpenMD)   gengetopt_args_info   MPITraits< SquareMatrix3< T > > (OpenMD)   RestReader (OpenMD)   TreeParser::Tracer (antlr)   
CircularQueue (antlr)   GhostBend (OpenMD)   MPITraits< Vector3< T > > (OpenMD)   RestWriter (OpenMD)   Parser::Tracer (antlr)   
cmdline_parser_params   GhostTorsion (OpenMD)   MPITraits< Vector< T, Dim > > (OpenMD)   Revision (OpenMD)   CharScanner::Tracer (antlr)   
COHZ (OpenMD)   Globals (OpenMD)   MTRand (OpenMD)   TokenStreamRewriteEngine::RewriteOperation (antlr)   TrappeTorsionType (OpenMD)   
CommonAST (antlr)   GofAngle2 (OpenMD)   MultipassCorrFunc (OpenMD)   RhoR (OpenMD)   TreeNode (OpenMD)   
CommonASTWithHiddenTokens (antlr)   GofR (OpenMD)   MultipoleAdapter (OpenMD)   RhoZ (OpenMD)   TreeParser (antlr)   
CommonHiddenStreamToken (antlr)   GofRAngle (OpenMD)   MultipoleAtomTypesSectionParser (OpenMD)   RigidBody (OpenMD)   TreeParserInputState (antlr)   
CommonToken (antlr)   GofRAngle2 (OpenMD)   MultipoleAtypeParameters (OpenMD)   RigidBodyStamp (OpenMD)   Triangle (OpenMD)   
Communicator (OpenMD)   GofROmega (OpenMD)   MultipoleSum (OpenMD)   RippleOP (OpenMD)   TruncatedCube (OpenMD)   
Comparator (OpenMD)   GofRTheta (OpenMD)   
  n  
RMSD (OpenMD)   tuple3 (OpenMD)   
compareOperationIndex (antlr::anonymous_namespace{TokenStreamRewriteEngine.cpp})   GofRZ (OpenMD)   RNEMD (OpenMD)   tuple4 (OpenMD)   
Component (OpenMD)   GofXyz (OpenMD)   NameFinder (OpenMD)   RNEMDParameters (OpenMD)   TupleMatcher (OpenMD)   
CompositeConstraint (QuantLib)   GofZ (OpenMD)   NanoLength (OpenMD)   RNEMDR (OpenMD)   TwoDGofR (OpenMD)   
CompositeShape (OpenMD)   GreaterThanConstraint (OpenMD)   NanoVolume (OpenMD)   RNEMDRTheta (OpenMD)   TypeContainer (OpenMD)   
CompositeVisitor (OpenMD)   GreaterThanOrEqualTo (OpenMD)   NegativeConstraint (OpenMD)   RNEMDZ (OpenMD)   TypeInfo   
ConjugateGradient (QuantLib)   Grid3D (OpenMD)   NgammaT (OpenMD)   RotationAlgorithm (OpenMD)   
  u  
Constraint (QuantLib)   Grid3d   NitrileFrequencyMap (OpenMD)   RoughShell (OpenMD)   
ConstraintData (OpenMD)   gzstreambase (OpenMD)   NoConstraint (QuantLib)   RPInteractionData (OpenMD)   UniformField (OpenMD)   
ConstraintElem (OpenMD)   gzstreambuf (OpenMD)   NonBondedInteraction (OpenMD)   
  s  
UniformGradient (OpenMD)   
ConstraintPair (OpenMD)   
  h  
NonBondedInteractionsSectionParser (OpenMD)   UreyBradleyBend (OpenMD)   
ConstraintStamp (OpenMD)   NonBondedInteractionType (OpenMD)   SameAngle (OpenBabel)   UreyBradleyBendType (OpenMD)   
ConstraintWriter (OpenMD)   HarmonicBendType (OpenMD)   NonBondedInteractionTypeProperties (OpenMD)   SameSectionParserFunctor (OpenMD)   
  v  
ContactAngle1 (OpenMD)   HarmonicBondType (OpenMD)   NonNegativeConstraint (OpenMD)   SC (OpenMD)   
ContactAngle2 (OpenMD)   HarmonicInversionType (OpenMD)   NonPositiveConstraint (OpenMD)   SCAtomData (OpenMD)   VanDerWaalsInteraction (OpenMD)   
ContainsConstraint (OpenMD)   HarmonicTorsionType (OpenMD)   NonZeroConstraint (OpenMD)   SCAtomTypesSectionParser (OpenMD)   VCorrFunc (OpenMD)   
ConvexHull (OpenMD)   Molecule::HBondDonor (OpenMD)   NoStatus (OpenMD)   SCAtypeParameters (OpenMD)   VCorrFuncR (OpenMD)   
CoordinationNumber (OpenMD)   HBondGeometric (OpenMD)   NotEmptyConstraint (OpenMD)   SCDElem (OpenMD)   VCorrFuncZ (OpenMD)   
CosineBendType (OpenMD)   HBondJump (OpenMD)   NotParamConstraint (OpenMD)   SCDOrderParameter (OpenMD)   Vector (OpenMD)   
CrossCorrFunc (OpenMD)   any::holder (boost)   NoViableAltException (antlr)   SCInteractionData (OpenMD)   Vector3 (OpenMD)   
CubicBendType (OpenMD)   Hull (OpenMD)   NoViableAltForCharException (antlr)   SCN (OpenMD)   VectorAccumulator (OpenMD)   
CubicBondType (OpenMD)   HullFinder (OpenMD)   NPA (OpenMD)   SDKBend (OpenMD)   VectorTypeData (OpenMD)   
CubicLattice (OpenMD)   Hxy (OpenMD)   NPAT (OpenMD)   SDKBendType (OpenMD)   Velocitizer (OpenMD)   
CubicSpline (OpenMD)   HydrodynamicsModel (OpenMD)   NPrT (OpenMD)   SDShape (OpenMD)   VelocityField (OpenMD)   
CubicTorsionType (OpenMD)   HydrodynamicsModelBuilder (OpenMD)   NPT (OpenMD)   SDShape   VelocityVerletIntegrator (OpenMD)   
Cuboctahedron (OpenMD)   HydrodynamicsModelCreator (OpenMD)   NPTf (OpenMD)   SectionParser (OpenMD)   
  w  
CurlingStoneDecahedron (OpenMD)   HydrodynamicsModelFactory (OpenMD)   NPTi (OpenMD)   SectionParserContext (OpenMD)   
custom_getopt_data   HydrogenBondingInteraction (OpenMD)   NPTsz (OpenMD)   SectionParserManager (OpenMD)   WaterTypeVisitor (OpenMD)   
CutoffGroup (OpenMD)   HydroProp (OpenMD)   NPTxyz (OpenMD)   SelectionCompiler (OpenMD)   Wildcard   
CutoffGroupStamp (OpenMD)   
  i  
NVE (OpenMD)   SelectionCorrFunc (OpenMD)   WrappingVisitor (OpenMD)   
  d  
NVT (OpenMD)   SelectionEvaluator (OpenMD)   
  x  
IcosahedralOfR (OpenMD)   
  o  
SelectionManager (OpenMD)   
DataHolder (OpenMD)   Icosahedron (OpenMD)   SelectionSet (OpenMD)   XYZVisitor (OpenMD)   
DataStorage (OpenMD)   ifstrstream (OpenMD)   ObjectCount (OpenMD)   SelfData (OpenMD)   
  z  
Decahedron (OpenMD)   igzstream (OpenMD)   ObjectiveFunction (QuantLib)   SemanticException (antlr)   
DefaultAtomVisitor (OpenMD)   Constraint::Impl (QuantLib)   ObjectRestraint (OpenMD)   SeqRandNumGen (OpenMD)   ZconsData (OpenMD)   
TokenStreamRewriteEngine::DeleteOp (antlr)   NoConstraint::Impl (QuantLib)   ogzstream (OpenMD)   SequentialAnalyzer (OpenMD)   ZConsReader (OpenMD)   
DensityField (OpenMD)   PositiveConstraint::Impl (QuantLib)   OpenMDBitSet (OpenMD)   Shake (OpenMD)   ZConsStamp (OpenMD)   
DensityPlot (OpenMD)   BoundaryConstraint::Impl (QuantLib)   OpenMDException (OpenMD)   Shape (OpenMD)   ZconstraintForceManager (OpenMD)   
DipoleCorrFunc (OpenMD)   CompositeConstraint::Impl (QuantLib)   OpenMDFormat (OpenBabel)   ShapeAtomType (OpenMD)   ZconstraintMol (OpenMD)   
DipoleField (OpenMD)   ImproperCosineInversionParameter (OpenMD)   OplsTorsionType (OpenMD)   ShapeAtomTypesSectionParser (OpenMD)   ZconstraintParam (OpenMD)   
DirectionalAdapter (OpenMD)   ImproperCosineInversionType (OpenMD)   OptimizationBuilder (OpenMD)   ShapeBuilder (OpenMD)   ZConsVisitor (OpenMD)   
DirectionalAtom (OpenMD)   IndexFinder (OpenMD)   OptimizationCreator (OpenMD)   shapedLattice (OpenMD)   ZConsWriter (OpenMD)   
DirectionalAtomTypesSectionParser (OpenMD)   IndexListContainer (OpenMD)   OptimizationFactory (OpenMD)   shapedLatticeEllipsoid (OpenMD)   ZeroConstraint (OpenMD)   
DirectionalAtypeParameters (OpenMD)   InoDecahedron (OpenMD)   OptimizationMethod (QuantLib)   shapedLatticePentRod (OpenMD)   ZhouParameters (OpenMD)   
DirectionalRCorrFunc (OpenMD)   InputBuffer (antlr)   option   shapedLatticeRod (OpenMD)   
DistanceFinder (OpenMD)   TokenStreamRewriteEngine::InsertBeforeOp (antlr)   OptionSectionParser (OpenMD)   shapedLatticeSpherical (OpenMD)   
DLM (OpenMD)   Integrator (OpenMD)   P2OrderParameter::OrderParam (OpenMD)   SHAPES (OpenMD)   
DumpReader (OpenMD)   IntegratorBuilder (OpenMD)   RippleOP::OrderParam (OpenMD)   ShellStatistics (OpenMD)   
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