OpenMD  2.4
Molecular Dynamics in the Open
Class Index
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z | _
  A  
EAMAtomTypesSectionParser (OpenMD)   Lattice (OpenMD)   Perturbation (OpenMD)   StringTokenizer (OpenMD)   
EAMAtypeParameters (OpenMD)   LatticeBuilder (OpenMD)   Plan (OpenMD)   StuntDouble (OpenMD)   
Accumulator (OpenMD)   EAMInteractionData (OpenMD)   LatticeCreator (OpenMD)   PolarizableAdapter (OpenMD)   SurfaceDiffusion (OpenMD)   
ActionCorrFunc (OpenMD)   EAMMixingParam (OpenMD)   LatticeFactory (OpenMD)   PolarizableAtomTypesSectionParser (OpenMD)   SuttonChenAdapter (OpenMD)   
AlphaHull (OpenMD)   Eigenvalue (JAMA)   LDForceManager (OpenMD)   PolarizableAtypeParameters (OpenMD)   SVD (JAMA)   
AmberImproperTorsionType (OpenMD)   Electrostatic (OpenMD)   LegendreCorrFunc (OpenMD)   Polynomial (OpenMD)   SwitchingFunction (OpenMD)   
AnalyticalModel (OpenMD)   ElectrostaticAtomData (OpenMD)   LegendreCorrFuncZ (OpenMD)   PolynomialBendType (OpenMD)   SystemDecomposition (OpenMD)   
AndParamConstraint (OpenMD)   ElectrostaticInteraction (OpenMD)   LegendrePolynomial (OpenMD)   PolynomialBondType (OpenMD)   SystemDipoleCorrFunc (OpenMD)   
AngleR (OpenMD)   Element (OpenMD)   LennardJonesAdapter (OpenMD)   PolynomialInversionType (OpenMD)   
  T  
ANTLRException (antlr)   ElementsTable (OpenMD)   LennardJonesAtomTypesSectionParser (OpenMD)   PolynomialTorsionType (OpenMD)   
ApproximationModel (OpenMD)   Ellipsoid (OpenMD)   LennardJonesInteractionType (OpenMD)   PositiveConstraint (QuantLib)   TetrahedralityHBMatrix (OpenMD)   
ArmijoLineSearch (QuantLib)   EndCriteria (QuantLib)   LessThanConstraint (OpenMD)   PositiveConstraint (OpenMD)   TetrahedralityParam (OpenMD)   
AST (antlr)   EnergyCorrFunc (OpenMD)   LessThanOrEqualToConstraint (OpenMD)   PotDiff (OpenMD)   TetrahedralityParamXYZ (OpenMD)   
ASTArray (antlr)   EqualConstraint (OpenMD)   LessThanPeriodicityFunctor (OpenMD)   PotentialEnergyObjectiveFunction (OpenMD)   TetrahedralityParamZ (OpenMD)   
ASTFactory (antlr)   EqualIgnoreCaseConstraint (OpenMD)   LexerInputState (antlr)   PotVecAccumulator (OpenMD)   Thermo (OpenMD)   
ASTNULLType (antlr)   EvenConstraint (OpenMD)   LineSearch (QuantLib)   PredAndFunctor (OpenMD)   ThermoIntegrationForceManager (OpenMD)   
ASTPair (antlr)   ExteriorFunctor (OpenMD)   LineSearchBasedMethod (QuantLib)   PredFacade (OpenMD)   ThetaCorrFunc (OpenMD)   
ASTRef (antlr)   
  F  
LipidHeadVisitor (OpenMD)   PredNotFunctor (OpenMD)   TimeCorrFunc (OpenMD)   
ASTRefCount (antlr)   LipidTransVisitor (OpenMD)   PredOrFunctor (OpenMD)   Token (OpenMD)   
Atom (OpenMD)   FCCLattice (OpenMD)   LJ (OpenMD)   PrepareVisitor (OpenMD)   Token (antlr)   
AtomData (OpenMD)   FCCOfR (OpenMD)   LJAtypeParameters (OpenMD)   Problem (QuantLib)   TokenBuffer (antlr)   
AtomInfo (OpenMD)   FilenameObserver   LJInteractionData (OpenMD)   ProgressBar (OpenMD)   TokenMap (OpenMD)   
AtomNameVisitor (OpenMD)   FixedBondType (OpenMD)   LLkParser (antlr)   PropertyMap (OpenMD)   TokenRef (antlr)   
AtomStamp (OpenMD)   FixedChargeAdapter (OpenMD)   LocalIndexManager (OpenMD)   
  Q  
TokenRefCount (antlr)   
AtomType (OpenMD)   FixedChargeAtypeParameters (OpenMD)   
  M  
TokenStream (antlr)   
AtomTypesSectionParser (OpenMD)   FluctuatingAtypeParameters (OpenMD)   QuarticBendType (OpenMD)   TokenStreamBasicFilter (antlr)   
AutoCorrFunc (OpenMD)   FluctuatingChargeAdapter (OpenMD)   MatrixAccumulator (OpenMD)   QuarticBondType (OpenMD)   TokenStreamException (antlr)   
  B  
FluctuatingChargeAtomData (OpenMD)   MAW (OpenMD)   QuarticTorsionType (OpenMD)   TokenStreamHiddenTokenFilter (antlr)   
FluctuatingChargeAtomTypesSectionParser (OpenMD)   MAWInteractionData (OpenMD)   Quaternion (OpenMD)   TokenStreamIOException (antlr)   
BaseAccumulator (OpenMD)   FluctuatingChargeConstraints (OpenMD)   MAWInteractionType (OpenMD)   
  R  
TokenStreamRecognitionException (antlr)   
BaseAST (antlr)   FluctuatingChargeForces (OpenMD)   MDLexer   TokenStreamRetryException (antlr)   
BaseAtomTypesSectionParser (OpenMD)   FluctuatingChargeLangevin (OpenMD)   MDParser   RadialDistrFunc (OpenMD)   TokenStreamRewriteEngine (antlr)   
BaseAtomVisitor (OpenMD)   FluctuatingChargeNVT (OpenMD)   MDTreeParser   RandNumGen (OpenMD)   TokenStreamSelector (antlr)   
BaseRigidBodyVisitor (OpenMD)   FluctuatingChargeObjectiveFunction (OpenMD)   MemoryUtils (OpenMD)   Rattle (OpenMD)   TokenWithIndex (antlr)   
BaseVisitor (OpenMD)   FluctuatingChargeParameters (OpenMD)   MetallicInteraction (OpenMD)   RBCOMVisitor (OpenMD)   Torsion (OpenMD)   
BeadLattice (OpenMD)   FluctuatingChargePropagator (OpenMD)   Mie (OpenMD)   RCorrFunc (OpenMD)   TorsionData (OpenMD)   
BeadModel (OpenMD)   ForceDecomposition (OpenMD)   MieInteractionData (OpenMD)   RCorrFuncR (OpenMD)   TorsionDataSet (OpenMD)   
BeadParam (OpenMD)   ForceField (OpenMD)   MieInteractionType (OpenMD)   RCorrFuncZ (OpenMD)   TorsionStamp (OpenMD)   
Bend (OpenMD)   ForceFieldOptions (OpenMD)   MinimizerParameters (OpenMD)   RealSphericalHarmonic (OpenMD)   TorsionType (OpenMD)   
BendData (OpenMD)   ForceManager (OpenMD)   MismatchedCharException (antlr)   RealSymmetricTridiagonal (OpenMD)   TorsionTypeParser (OpenMD)   
BendDataSet (OpenMD)   ForceMatrixDecomposition (OpenMD)   MismatchedTokenException (antlr)   RecognitionException (antlr)   TorsionTypesSectionParser (OpenMD)   
BendStamp (OpenMD)   FragmentStamp (OpenMD)   MolecularRestraint (OpenMD)   RectMatrix (OpenMD)   TreeParser::Tracer (antlr)   
BendType (OpenMD)   FrameData (OpenMD)   Molecule (OpenMD)   RefCount::Ref (antlr)   Parser::Tracer (antlr)   
BendTypeParser (OpenMD)   FrameTimeCorrFunc (OpenMD)   MoleculeCreator (OpenMD)   RefCount (antlr)   CharScanner::Tracer (antlr)   
BendTypesSectionParser (OpenMD)   FreqFlucCorrFunc (OpenMD)   MoleculeStamp (OpenMD)   RegularDecahedron (OpenMD)   TrappeTorsionType (OpenMD)   
BFGS (QuantLib)   FromRangeFunctor (OpenMD)   MoLocator (OpenMD)   ReplacementVisitor (OpenMD)   TreeNode (OpenMD)   
BitSet (antlr)   
  G  
MomentumCorrFunc (OpenMD)   TokenStreamRewriteEngine::ReplaceOp (antlr)   TreeParser (antlr)   
BlockSnapshotManager (OpenMD)   Morse (OpenMD)   ReplicateVisitor (OpenMD)   TreeParserInputState (antlr)   
Bond (OpenMD)   GayBerneAdapter (OpenMD)   MorseBondType (OpenMD)   RepulsivePower (OpenMD)   Triangle (OpenMD)   
BondAngleDistribution (OpenMD)   GayBerneAtomTypesSectionParser (OpenMD)   MorseInteractionData (OpenMD)   RepulsivePowerInteractionType (OpenMD)   TupleMatcher (OpenMD)   
BondCorrFunc (OpenMD)   GB (OpenMD)   MorseInteractionType (OpenMD)   Restraint (OpenMD)   TwoDGofR (OpenMD)   
BondOrderParameter (OpenMD)   GBAtypeParameters (OpenMD)   MPITraits (OpenMD)   RestraintForceManager (OpenMD)   TypeContainer (OpenMD)   
BondStamp (OpenMD)   GBheadVisitor (OpenMD)   MPITraits< RectMatrix< T, R, C > > (OpenMD)   RestraintStamp (OpenMD)   TypeInfo   
BondType (OpenMD)   GBInteractionData (OpenMD)   MPITraits< SquareMatrix3< T > > (OpenMD)   RestReader (OpenMD)   
  U  
BondTypeParser (OpenMD)   GBtailVisitor (OpenMD)   MPITraits< Vector3< T > > (OpenMD)   RestWriter (OpenMD)   
BondTypesSectionParser (OpenMD)   GCN (OpenMD)   MPITraits< Vector< T, Dim > > (OpenMD)   Revision (OpenMD)   UniformField (OpenMD)   
BOPofR (OpenMD)   GCNSeq (OpenMD)   MTRand (OpenMD)   TokenStreamRewriteEngine::RewriteOperation (antlr)   UniformGradient (OpenMD)   
BoundaryConstraint (QuantLib)   GenericData (OpenMD)   MultipassCorrFunc (OpenMD)   RhoR (OpenMD)   UreyBradleyBend (OpenMD)   
  C  
GenericFactory (OpenMD)   MultipoleAdapter (OpenMD)   RhoZ (OpenMD)   UreyBradleyBendType (OpenMD)   
GhostBend (OpenMD)   MultipoleAtomTypesSectionParser (OpenMD)   RigidBody (OpenMD)   
  V  
CenterOfMass (OpenMD)   GhostTorsion (OpenMD)   MultipoleAtypeParameters (OpenMD)   RigidBodyStamp (OpenMD)   
CharBuffer (antlr)   Globals (OpenMD)   MultipoleSum (OpenMD)   RippleOP (OpenMD)   VanDerWaalsInteraction (OpenMD)   
CharClassification (OpenMD)   GofAngle2 (OpenMD)   
  N  
RMSD (OpenMD)   VCorrFunc (OpenMD)   
ChargeAtomTypesSectionParser (OpenMD)   GofR (OpenMD)   RNEMD (OpenMD)   VCorrFuncR (OpenMD)   
CharInputBuffer (antlr)   GofRAngle (OpenMD)   NameFinder (OpenMD)   RNEMDParameters (OpenMD)   VCorrFuncZ (OpenMD)   
CharmmTorsionParameter (OpenMD)   GofROmega (OpenMD)   NanoLength (OpenMD)   RNEMDR (OpenMD)   Vector (OpenMD)   
CharmmTorsionType (OpenMD)   GofRTheta (OpenMD)   NanoVolume (OpenMD)   RNEMDRTheta (OpenMD)   Vector3 (OpenMD)   
CharScanner (antlr)   GofRZ (OpenMD)   NegativeConstraint (OpenMD)   RNEMDZ (OpenMD)   VectorAccumulator (OpenMD)   
CharScannerLiteralsLess (antlr)   GofXyz (OpenMD)   NgammaT (OpenMD)   RotationAlgorithm (OpenMD)   VectorTypeData (OpenMD)   
CharStreamException (antlr)   GofZ (OpenMD)   NitrileFrequencyMap (OpenMD)   RoughShell (OpenMD)   Velocitizer (OpenMD)   
CharStreamIOException (antlr)   GreaterThanConstraint (OpenMD)   NoConstraint (QuantLib)   RPInteractionData (OpenMD)   VelocityVerletIntegrator (OpenMD)   
ChebyshevT (OpenMD)   GreaterThanOrEqualTo (OpenMD)   NonBondedInteraction (OpenMD)   
  S  
  W  
ChebyshevU (OpenMD)   Grid3D (OpenMD)   NonBondedInteractionsSectionParser (OpenMD)   
CircularQueue (antlr)   Grid3d   NonBondedInteractionType (OpenMD)   SameAngle (OpenBabel)   WaterTypeVisitor (OpenMD)   
COHZ (OpenMD)   
  H  
NonBondedInteractionTypeProperties (OpenMD)   SameSectionParserFunctor (OpenMD)   Wildcard   
CommonAST (antlr)   NonNegativeConstraint (OpenMD)   SC (OpenMD)   WrappingVisitor (OpenMD)   
CommonASTWithHiddenTokens (antlr)   HarmonicBendType (OpenMD)   NonPositiveConstraint (OpenMD)   SCAtomData (OpenMD)   
  X  
CommonHiddenStreamToken (antlr)   HarmonicBondType (OpenMD)   NonZeroConstraint (OpenMD)   SCAtomTypesSectionParser (OpenMD)   
CommonToken (antlr)   HarmonicInversionType (OpenMD)   NoStatus (OpenMD)   SCAtypeParameters (OpenMD)   XYZVisitor (OpenMD)   
Communicator (OpenMD)   HarmonicTorsionType (OpenMD)   NotEmptyConstraint (OpenMD)   SCDElem (OpenMD)   
  Z  
Comparator (OpenMD)   Molecule::HBondDonor (OpenMD)   NotParamConstraint (OpenMD)   SCDOrderParameter (OpenMD)   
Component (OpenMD)   HBondGeometric (OpenMD)   NoViableAltException (antlr)   SCInteractionData (OpenMD)   ZconsData (OpenMD)   
CompositeConstraint (QuantLib)   HBondJump (OpenMD)   NoViableAltForCharException (antlr)   SDShape (OpenMD)   ZConsReader (OpenMD)   
CompositeShape (OpenMD)   Hull (OpenMD)   NPA (OpenMD)   SDShape   ZConsStamp (OpenMD)   
CompositeVisitor (OpenMD)   HullFinder (OpenMD)   NPAT (OpenMD)   SectionParser (OpenMD)   ZconstraintForceManager (OpenMD)   
ConjugateGradient (QuantLib)   Hxy (OpenMD)   NPrT (OpenMD)   SectionParserContext (OpenMD)   ZconstraintMol (OpenMD)   
Constraint (QuantLib)   HydrodynamicsModel (OpenMD)   NPT (OpenMD)   SectionParserManager (OpenMD)   ZconstraintParam (OpenMD)   
ConstraintData (OpenMD)   HydrodynamicsModelBuilder (OpenMD)   NPTf (OpenMD)   SelectionCompiler (OpenMD)   ZConsVisitor (OpenMD)   
ConstraintElem (OpenMD)   HydrodynamicsModelCreator (OpenMD)   NPTi (OpenMD)   SelectionCorrFunc (OpenMD)   ZConsWriter (OpenMD)   
ConstraintPair (OpenMD)   HydrodynamicsModelFactory (OpenMD)   NPTsz (OpenMD)   SelectionEvaluator (OpenMD)   ZeroConstraint (OpenMD)   
ConstraintStamp (OpenMD)   HydrogenBondingInteraction (OpenMD)   NPTxyz (OpenMD)   SelectionManager (OpenMD)   
  _  
ConstraintWriter (OpenMD)   HydroProp (OpenMD)   NumericConstant   SelectionSet (OpenMD)   
ContactAngle1 (OpenMD)   
  I  
NVE (OpenMD)   SelfData (OpenMD)   _getopt_data_a   
ContactAngle2 (OpenMD)   NVT (OpenMD)   SemanticException (antlr)   _getopt_data_w   
ContainsConstraint (OpenMD)   IcosahedralOfR (OpenMD)   
  O  
SeqRandNumGen (OpenMD)   
  a  
ConvexHull (OpenMD)   Icosahedron (OpenMD)   SequentialAnalyzer (OpenMD)   
CosineBendType (OpenMD)   NoConstraint::Impl (QuantLib)   ObjectCount (OpenMD)   Shake (OpenMD)   any (boost)   
CrossTimeCorrFunc (OpenMD)   PositiveConstraint::Impl (QuantLib)   ObjectiveFunction (QuantLib)   Shape (OpenMD)   
  b  
CubicBendType (OpenMD)   BoundaryConstraint::Impl (QuantLib)   ObjectRestraint (OpenMD)   ShapeAtomType (OpenMD)   
CubicBondType (OpenMD)   CompositeConstraint::Impl (QuantLib)   OpenMDBitSet (OpenMD)   ShapeAtomTypesSectionParser (OpenMD)   bad_any_cast (boost)   
CubicLattice (OpenMD)   Constraint::Impl (QuantLib)   OpenMDException (OpenMD)   ShapeBuilder (OpenMD)   basic_teebuf (OpenMD)   
CubicSpline (OpenMD)   ImproperCosineInversionParameter (OpenMD)   OpenMDFormat (OpenBabel)   SHAPES (OpenMD)   
  c  
CubicTorsionType (OpenMD)   ImproperCosineInversionType (OpenMD)   OplsTorsionType (OpenMD)   ShellStatistics (OpenMD)   
CurlingStoneDecahedron (OpenMD)   IndexFinder (OpenMD)   OptimizationBuilder (OpenMD)   ShortRangeInteraction (OpenMD)   cmdline_parser_params   
CutoffGroup (OpenMD)   IndexListContainer (OpenMD)   OptimizationCreator (OpenMD)   SimCreator (OpenMD)   compareOperationIndex (antlr::anonymous_namespace{TokenStreamRewriteEngine.cpp})   
CutoffGroupStamp (OpenMD)   InoDecahedron (OpenMD)   OptimizationFactory (OpenMD)   SimInfo (OpenMD)   custom_getopt_data   
  D  
InputBuffer (antlr)   OptimizationMethod (QuantLib)   SimplePreprocessor   
  d  
TokenStreamRewriteEngine::InsertBeforeOp (antlr)   OptionSectionParser (OpenMD)   SimplePreprocessor (OpenMD)   
DataHolder (OpenMD)   Integrator (OpenMD)   P2OrderParameter::OrderParam (OpenMD)   SimpleTypeData (OpenMD)   dumpTokenWithIndex (antlr::anonymous_namespace{TokenStreamRewriteEngine.cpp})   
DataStorage (OpenMD)   IntegratorBuilder (OpenMD)   RippleOP::OrderParam (OpenMD)   SimSnapshotManager (OpenMD)   
  e  
Decahedron (OpenMD)   IntegratorCreator (OpenMD)   OrParamConstraint (OpenMD)   SlabStatistics (OpenMD)   
DefaultAtomVisitor (OpenMD)   IntegratorFactory (OpenMD)   RNEMD::OutputData (OpenMD)   Snapshot (OpenMD)   errorStruct   
TokenStreamRewriteEngine::DeleteOp (antlr)   InteractionData (OpenMD)   OutputData (OpenMD)   SnapshotManager (OpenMD)   TokenStreamRewriteEngine::executeOperation (antlr)   
DensityPlot (OpenMD)   InteractionManager (OpenMD)   
  P  
SpatialStatistics (OpenMD)   
  g  
DipoleCorrFunc (OpenMD)   InteractionTimeCorrFunc (OpenMD)   Sphere (OpenMD)   
DirectionalAdapter (OpenMD)   InteriorFunctor (OpenMD)   P2OrderParameter (OpenMD)   SphericalHarmonic (OpenMD)   generic_list   
DirectionalAtom (OpenMD)   Inversion (OpenMD)   PairList (OpenMD)   SquareMatrix (OpenMD)   generic_value   
DirectionalAtomTypesSectionParser (OpenMD)   InversionData (OpenMD)   ParallelRandNumGen (OpenMD)   SquareMatrix3 (OpenMD)   gengetopt_args_info   
DirectionalAtypeParameters (OpenMD)   InversionDataSet (OpenMD)   ParamConstraintFacade (OpenMD)   SSDAtomVisitor (OpenMD)   gzstreambase (OpenMD)   
DirectionalRCorrFunc (OpenMD)   InversionStamp (OpenMD)   Parameter   StaticAnalyser (OpenMD)   gzstreambuf (OpenMD)   
DistanceFinder (OpenMD)   InversionType (OpenMD)   ParameterBase   Stats (OpenMD)   
  h  
DLM (OpenMD)   InversionTypeParser (OpenMD)   ParametersTransformation (QuantLib)   Stats::StatsData (OpenMD)   
DumpReader (OpenMD)   InversionTypesSectionParser (OpenMD)   ParameterTraits   StatusFunction (OpenMD)   any::holder (boost)   
DumpStatusFunction (OpenMD)   IOException (antlr)   ParameterTraits< bool >   StatWriter (OpenMD)   
  i  
DumpWriter (OpenMD)   
  K  
ParameterTraits< int >   SteepestDescent (QuantLib)   
DynamicProperty (OpenMD)   ParameterTraits< RealType >   Sticky (OpenMD)   ifstrstream (OpenMD)   
DynamicRectMatrix (OpenMD)   Kirkwood (OpenMD)   ParameterTraits< std::pair< int, int > >   StickyAdapter (OpenMD)   igzstream (OpenMD)   
DynamicVector (OpenMD)   KirkwoodQuadrupoles (OpenMD)   ParameterTraits< std::string >   StickyAtomTypesSectionParser (OpenMD)   
  l  
  E  
  L  
ParameterTraits< std::vector< RealType > >   StickyAtypeParameters (OpenMD)   
ParameterTraits< unsigned long int >   StickyInteractionData (OpenMD)   line_list   
EAM (OpenMD)   LangevinDynamics (OpenMD)   Parser (antlr)   StickyPowerAtomTypesSectionParser (OpenMD)   logical_xor (OpenMD)   
EAMAdapter (OpenMD)   LangevinHullDynamics (OpenMD)   ParserInputState (antlr)   STLContainerTypeData   
  o  
EAMAtomData (OpenMD)   LangevinHullForceManager (OpenMD)   ParticleTimeCorrFunc (OpenMD)   StressCorrFunc (OpenMD)   
ogzstream (OpenMD)   
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z | _