Class antlr::ASTFactory: check all this code for possible use of references in stead of RefAST's.
Member antlr::ASTFactory::make (ASTArray *nodes): FIXME! I have a feeling we can get rid of this ugly ASTArray thing
Member antlr::CircularQueue< T >::elementAt (size_t idx) const: this should use at or should have a check
Class antlr::Parser: add constructors with ASTFactory.
Member antlr::ParserInputState::filename: wrap this one..
Class antlr::TokenBuffer: : see if we can integrate this one with InputBuffer into one template or so.
Class OpenMD::BaseAtomVisitor: document
Member OpenMD::Bend::calcForce (RealType &angle, bool doParticlePot): still a lot left to improve
Class OpenMD::BlockSnapshotManager: document
Class OpenMD::ChebyshevT: document
Class OpenMD::ChebyshevU: document
Class OpenMD::ConstraintPair: document
Class OpenMD::CubicBendType: document
Class OpenMD::CubicBondType: document
Class OpenMD::CubicTorsionType: document
Class OpenMD::DataStorage: DataStorage may need refactoring. Every vector can inherit from the same base class which will make it easy to maintain
Class OpenMD::DLM: document
Class OpenMD::DumpReader: get rid of more junk code from DumpReader
Class OpenMD::DumpWriter
Member OpenMD::DynamicRectMatrix< Real >::operator== (const DynamicRectMatrix< Real > &m): replace operator == by template function equal
Member OpenMD::getPrefix (const std::string &str): need implementation
Member OpenMD::GhostBend::calcForce (RealType &angle, bool doParticlePot): still a lot left to improve
Class OpenMD::HarmonicBendType: documentation
Class OpenMD::HydrodynamicsModel: document
Class OpenMD::HydrodynamicsModelBuilder< ConcreteHydrodynamicsModel >: document
Class OpenMD::IndexListContainer: documentation
Class OpenMD::Integrator: document
Class OpenMD::IntegratorBuilder< ConcreteIntegrator >: document
Class OpenMD::Lattice: document
Class OpenMD::LatticeBuilder< ConcreteLattice >: document
Class OpenMD::LegendrePolynomial: document
Class OpenMD::NVT: document
Class OpenMD::PolynomialBendType: documentation
Class OpenMD::PolynomialBondType: documentation
Class OpenMD::PolynomialInversionType: documentation
Class OpenMD::PolynomialTorsionType: documentation
Class OpenMD::QuarticBendType: document
Class OpenMD::QuarticBondType: document
Class OpenMD::QuarticTorsionType: document
Member OpenMD::RectMatrix< Real, Row, Col >::operator== (const RectMatrix< Real, Row, Col > &m): replace operator == by template function equal
Member OpenMD::RigidBody::calcRefCoords (): need modification
Class OpenMD::SectionParser: document
Class OpenMD::SelectionCompiler: document
Member OpenMD::SquareMatrix3< Real >::diagonalize (SquareMatrix3< Real > &a, Vector3< Real > &w, SquareMatrix3< Real > &v)
Member OpenMD::SquareMatrix< Real, Dim >::diagonalize (): need implementation
Class OpenMD::Token: document
Member OpenMD::TypeContainer< ElemType, SIZE >::find (KeyType &keys, const std::string &wildCard)
Class OpenMD::UreyBradleyBendType: documentation
Class OpenMD::ZConsReader: document
Member OpenMD::ZConsVisitor::ZConsVisitor (SimInfo *info): only works for single version now