| NJAMA | |
| CEigenvalue | Computes eigenvalues and eigenvectors of a real (non-complex) matrix |
| CQR | |
| CSVD | Singular Value Decomposition |
| NOpenMD | This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel |
| NPerturbations | |
| CLight | Applies an EM field representing light to the system |
| CLightParameters | |
| CVelocityFieldParameters | Parsed contents of the velocityField{ ... } block |
| NRNEMD | |
| CMethodFactory | |
| CNIVSMethod | |
| CRNEMD | |
| CRNEMDParameters | |
| CSPFForceManager | |
| CSPFMethod | |
| CSwapMethod | |
| CVSSMethod | |
| NUtils | |
| Ndetails | |
| Cis_container | |
| Cis_container< T, std::void_t< typename T::value_type, typename T::reference, typename T::const_reference, typename T::iterator, typename T::const_iterator, typename T::difference_type, typename T::size_type, decltype(std::declval< T >().begin()), decltype(std::declval< T >().end()), decltype(std::declval< T >().cbegin()), decltype(std::declval< T >().cend()), decltype(std::declval< T >().max_size()), decltype(std::declval< T >().empty())> > | |
| CAccumulator | |
| CAccumulator< Mat3x3d > | |
| CAccumulator< std::vector< RealType > > | |
| CAccumulator< Vector< RealType, Dim > > | |
| CAccumulatorView | |
| CAccumulatorView< Mat3x3dAccumulator > | |
| CAccumulatorView< PotVecAccumulator > | |
| CAccumulatorView< RealAccumulator > | |
| CAccumulatorView< StdVectorAccumulator > | |
| CAccumulatorView< Vector3dAccumulator > | |
| CBaseAccumulator | |
| Cci_char_traits | |
| CRandNumGen | Minimize the interface for the standard library's Mersenne Twister PRNG while maintaining the UniformRandomBitGenerator named requirement |
| CAccumulator | Basic Accumulator class for numbers |
| CActionCorrFunc | |
| CAlphaHull | Compute alpha complex or alpha shape |
| CAlphaHullFinder | |
| CAmberImproperTorsionType | "types/AmberImproperTorsionType.hpp" |
| CAnalyticalModel | |
| CAndParamConstraint | |
| CAngleR | |
| CAngularVelocityAutoOutProductCorrFunc | |
| CAngularVelVelOutProdCorrFunc | |
| CApproximateModel | |
| CAtom | |
| CAtomData | |
| CAtomicBeadModel | |
| CAtomInfo | |
| CAtomNameVisitor | |
| CAtomStamp | |
| CAtomType | AtomType is what OpenMD looks to for unchanging data about an atom |
| CAtomTypeCompare | |
| CAtomTypesSectionParser | "io/AtomTypesSectionParser.hpp" |
| CAutoCorrFunc | |
| CBaseAccumulator | |
| CBaseAtomTypesSectionParser | "io/BaseAtomTypesSectionParser.hpp" |
| CBaseAtomVisitor | |
| CBaseRigidBodyVisitor | |
| CBaseVisitor | |
| Cbasic_teebuf | As a subclass of basic_streambuf, basic_teebuf can operate on multiple stream simultaneously |
| CBCCLattice | |
| CBeadModel | References: |
| CBend | |
| CBendData | |
| CBendDataSet | |
| CBendStamp | |
| CBendType | |
| CBendTypeParser | |
| CBendTypesSectionParser | "io/BendTypesSectionParser.hpp" |
| CBlockSnapshotManager | |
| CBond | |
| CBondAngleDistribution | BondAngleDistribution |
| CBondCorrFunc | |
| CBondOrderParameter | Bond Order Parameter |
| CBondStamp | |
| CBondType | BondType class is responsible for calculating the force and energy of the bond |
| CBondTypeParser | |
| CBondTypesSectionParser | "io/BondTypesSectionParser.hpp" |
| CBOPofR | |
| CBoundaryElementModel | |
| CBoxObjectiveFunction | |
| CBuckingham | |
| CBuckinghamInteractionData | |
| CBuckinghamInteractionType | BuckinghamInteractionType is one of the basic non-bonded interactions for representing the non-Coulombic contribution in ionic and networked solids like silica and alumina |
| CCenterOfMass | |
| CChargeAtomTypesSectionParser | |
| CChargeDensityZ | |
| CChargeField | |
| CChargeHistogram | |
| CChargeKineticCorrFunc | |
| CChargeOrientationCorrFunc | |
| CChargeR | |
| CChargeZ | |
| CCharmmTorsionParameter | |
| CCharmmTorsionType | "types/CharmmTorsionType.hpp" These torsion types are defined identically with functional form given in the following paper: |
| CChebyshevT | A collection of Chebyshev Polynomials |
| CChebyshevU | A collection of Chebyshev Polynomials |
| CCOHZ | |
| CCollectiveDipoleDisplacement | Calculates the collective dipole displacement function |
| CCommunicator | |
| CComponent | |
| CCompositeShape | Combine composite pattern and visitor pattern |
| CCompositeVisitor | |
| CCOMVel | |
| CConstraintData | |
| CConstraintElem | An adapter class of StuntDouble which is used at constraint algorithm |
| CConstraintPair | |
| CConstraintStamp | |
| CConstraintWriter | |
| CContactAngle1 | Calculates the contact angle of a droplet with a surface using a spherical cap approximation for the droplet |
| CContactAngle2 | |
| CContainsConstraint | |
| CConvexHull | |
| CCoordinationNumber | CoordinationNumber |
| CCosineBendType | A simple harmonic bend using the cosine of the angle instead of the angle itself: |
| CCosineSeriesBendType | A bend used primarily in UFF that utilizes a Fourier series in terms of the cosine of the bend angle: |
| CCountDifference | |
| CCrossCorrFunc | |
| CCubicBendType | |
| CCubicBondType | |
| CCubicLattice | |
| CCubicSpline | |
| CCubicTorsionType | |
| CCuboctahedron | Generates coordinates of atoms inside a Cuboctahedron |
| CCurlingStoneDecahedron | |
| CCurrentDensity | |
| CCurrentDensityAutoCorrFunc | |
| CCutoffGroup | |
| CCutoffGroupStamp | |
| CDataHolder | |
| CDataStorage | |
| CDecahedron | Creates the regular decahedron, Ino decahedron, or truncated (Marks) decahedron structures (depending on the parameters) |
| CDefaultAtomVisitor | |
| CDensityField | |
| CDensityHistogram | |
| CDensityPlot | |
| CDipoleCorrFunc | |
| CDipoleField | |
| CDipoleOrientation | |
| CDirectionalAdapter | |
| CDirectionalAtom | |
| CDirectionalAtomTypesSectionParser | |
| CDirectionalAtypeParameters | |
| CDirectionalRCorrFunc | |
| CDisplacement | |
| CDisplacementZ | |
| CDistanceFinder | |
| CDLM | |
| CDumpReader | |
| CDumpStatusFunction | |
| CDumpWriter | |
| CDynamicProperty | "applications/dynamicProps/DynamicProperty" |
| CDynamicRectMatrix | Rectangular matrix class with contiguous flat storage |
| CDynamicVector | Dynamically-sized vector class |
| CEAM | |
| CEAMAdapter | |
| CEAMAtomData | |
| CEAMAtomTypesSectionParser | "io/EAMAtomTypesSectionParser.hpp" |
| CEAMInteractionData | |
| CEAMInteractionType | EAMInteractionType is one of the basic metallic interactions for representing the bonding in metallic solids |
| CEAMParameters | |
| CElectrostatic | |
| CElectrostaticAtomData | |
| CElectrostaticInteraction | The basic interface for electrostatic interactions |
| CElement | |
| CElementsTable | Periodic Table of the Elements Using element data is a place holder when we lack information about a specific atom type |
| CEllipsoid | An ellipsoid in OpenMD is restricted to having two equal equatorial semi-axes |
| CEqualConstraint | |
| CEqualIgnoreCaseConstraint | |
| CEquipartition | |
| CEvenConstraint | |
| CFCCLattice | |
| CFCCOfR | |
| CField | |
| CFixedBondType | FixedBondType class is responsible for calculating the force and energy of the bond |
| CFixedChargeAdapter | |
| CFixedChargeAtypeParameters | |
| CFluctuatingAtypeParameters | |
| CFluctuatingChargeAdapter | |
| CFluctuatingChargeAtomData | |
| CFluctuatingChargeAtomTypesSectionParser | |
| CFluctuatingChargeConstraints | |
| CFluctuatingChargeDamped | |
| CFluctuatingChargeForces | |
| CFluctuatingChargeLangevin | |
| CFluctuatingChargeNVE | |
| CFluctuatingChargeNVT | |
| CFluctuatingChargeObjectiveFunction | |
| CFluctuatingChargeParameters | |
| CFluctuatingChargePropagator | Abstract class for propagating fluctuating charge variables |
| CFluxOut | |
| CForceAutoCorrFunc | |
| CForceDecomposition | ForceDecomposition is an interface for passing out and collecting information from many processors at various stages of the main non-bonded ForceLoop |
| CForceField | |
| CForceFieldOptions | |
| CForceManager | ForceManager is responsible for calculating both the short range (bonded) interactions and long range (non-bonded) interactions |
| CForceMatrixDecomposition | |
| CForceModifier | Abstract class for external ForceModifier classes |
| CForTorCorrFunc | |
| CFragmentStamp | |
| CFrameData | FrameData is a structure for holding system-wide dynamic data about the simulation |
| CFreqFlucCorrFunc | Frequency Fluctuation Correlation Function |
| CFuncflParameters | |
| CGaussianTriangleQuadratureRule | |
| CGayBerneAdapter | |
| CGayBerneAtomTypesSectionParser | |
| CGB | |
| CGBAtypeParameters | |
| CGBheadVisitor | |
| CGBInteractionData | |
| CGBtailVisitor | |
| CGCN | Generalized Coordinate Number |
| CGCNSeq | Generalized Coordinate Number Sequence |
| CGenericData | @ class GenericData GenericData.hpp "utils/GenericData.hpp" |
| CGenericFactory | GenericFactory is a template based Object Factory Factory pattern is used to define an interface for creating an object |
| CGhostBend | |
| CGhostTorsion | |
| CGlobals | |
| CGofAngle2 | |
| CGofR | |
| CGofRAngle | |
| CGofRAngle2 | |
| CGofROmega | |
| CGofRTheta | |
| CGofRZ | |
| CGofXyz | |
| CGofZ | |
| CGreaterThanConstraint | |
| CGreaterThanOrEqualTo | |
| CGrid3D | |
| Cgzstreambase | |
| Cgzstreambuf | |
| CHarmonicBendType | |
| CHarmonicBondType | HarmonicBondType is the basic OpenMD bond type |
| CHarmonicInversionType | This inversion potential has the form: |
| CHarmonicSineBendType | A bend using the square of the sine of the angle instead of the angle itself: |
| CHarmonicTorsionType | These torsion types are defined identically with functional form given in equation 5 in the following paper: |
| CHBondGeometric | Hydrogen Bonding statistics using geometric criteria |
| CHBondJump | |
| CHBondJumpR | |
| CHBondJumpZ | |
| CHBondPersistence | |
| CHBondR | Hydrogen Bonding density binned by r |
| CHBondRvol | Hydrogen Bonding density binned by r |
| CHBondZ | Hydrogen Bonding density binned by z |
| CHBondZvol | Hydrogen Bonding density binned by z |
| CHull | |
| CHullFinder | |
| CHxy | |
| CHydrodynamicsElement | |
| CHydrodynamicsModel | |
| CHydrodynamicsModelBuilder | |
| CHydrodynamicsModelCreator | |
| CHydrodynamicsModelFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an HydrodynamicsModel |
| CHydrogenBondingInteraction | The basic interface for hydrogen bonding interactions |
| CHydroIO | |
| CHydroProp | Container for information about the hydrodynamic behavior of objects interacting with surroundings |
| CIcosahedralOfR | |
| CIcosahedron | Create the Mackay icosahedron structure |
| Cifstrstream | Ifstrstream class provides a stream interface to read data from files |
| Cigzstream | |
| CImproperCosineInversionParameter | |
| CImproperCosineInversionType | "types/ImproperCosineInversionType.hpp" |
| CIndexFinder | |
| CIndexListContainer | |
| CInoDecahedron | |
| CIntegrator | Declaration of the Integrator base class, which all other integrators inherit from |
| CIntegratorBuilder | |
| CIntegratorCreator | |
| CIntegratorFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an Integrator |
| CInteractionData | The InteractionData struct |
| CInteractionManager | InteractionManager is responsible for keeping track of the non-bonded interactions (C++) |
| CInversePowerSeries | |
| CInversePowerSeriesInteractionData | |
| CInversePowerSeriesInteractionType | InversePowerSeriesInteractionType is a sum of powers in the inverse of r: |
| CInversion | |
| CInversionData | |
| CInversionDataSet | |
| CInversionStamp | |
| CInversionType | |
| CInversionTypeParser | "types/InversionTypeParser.hpp" |
| CInversionTypesSectionParser | "io/InversionTypesSectionParser.hpp" |
| CKirkwood | |
| CKirkwoodBuff | |
| CKirkwoodQuadrupoles | |
| CLangevinDynamics | |
| CLangevinHullForceModifier | Force modifier for NPT Langevin Hull Dynamics applying friction and random forces as well as torques |
| CLangevinPiston | Constant pressure and temperature integrator |
| CLattice | |
| CLatticeBuilder | |
| CLatticeCreator | |
| CLatticeFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an Lattice |
| CLDForceModifier | Force modifier for Langevin Dynamics applying friction and random forces as well as torques |
| CLegendreCorrFunc | |
| CLegendreCorrFuncZ | |
| CLegendreGauss1d | |
| CLegendreGauss1dParams | |
| CLegendrePolynomial | A collection of Legendre Polynomials |
| CLennardJonesAdapter | |
| CLennardJonesAtomTypesSectionParser | |
| CLennardJonesInteractionType | LennardJonesInteractionType is one of the basic interaction types |
| CLessThanConstraint | |
| CLessThanOrEqualToConstraint | |
| CLessThanPeriodicityFunctor | |
| CLHDForceModifier | |
| CLipidHeadVisitor | |
| CLipidTransVisitor | |
| CLJ | |
| CLJAtypeParameters | |
| CLJInteractionData | |
| CLocalIndexManager | "utils/LocalIndexManager.hpp" |
| CMagneticField | Applies a uniform (vector) magnetic field to the system |
| CMassDensityR | |
| CMassDensityZ | |
| CMatrixAccumulator | |
| CMAW | |
| CMAWInteractionData | |
| CMAWInteractionType | MAWInteractionType (Metal-Angular-Water) is one of the basic Metal-to-NonMetal interaction types |
| CMeanDisplacement | |
| CMesh | |
| CMetallicInteraction | The basic interface for metallic interactions |
| CMie | |
| CMieInteractionData | |
| CMieInteractionType | MieInteractionType is one of the basic interaction types |
| CMinimizerParameters | |
| CMolecularRestraint | MolecularRestraint is the restraint (both positional and orientational) for the configuration of a flexible Molecule relative to some reference structure for the same Molecule |
| CMolecule | |
| CHBondDonor | |
| CMoleculeACF | |
| CMoleculeCCF | |
| CMoleculeCount | |
| CMoleculeCreator | |
| CMoleculeStamp | |
| CMoleculeStampCompare | |
| CMoLocator | |
| CMomAngMomCorrFunc | |
| CMomentData | |
| CMomentumHistogram | |
| CMorse | |
| CMorseBondType | MorseBondType is a more realistic bond potential |
| CMorseInteractionData | |
| CMorseInteractionType | MorseInteractionType is one of the basic non-bonded interactions |
| CMPITraits | |
| CMPITraits< RectMatrix< T, R, C > > | |
| CMPITraits< SquareMatrix3< T > > | |
| CMPITraits< Vector3< T > > | |
| CMPITraits< Vector< T, Dim > > | |
| CMSMSFormat | |
| CMultiComponentRDF | Multi-Component Radial Distribution Function |
| CMultipoleAdapter | |
| CMultipoleAtomTypesSectionParser | |
| CMultipoleAtypeParameters | |
| CMultipoleSum | |
| CNameFinder | |
| CNanoLength | |
| CNanoVolume | |
| CNegativeConstraint | |
| CNEP | |
| CNEPAtoms | |
| CNgammaT | Constant lateral surface tension integrator |
| CNitrileFrequencyMap | |
| CNodesStamp | |
| CNonBondedInteraction | The basic interface for non-bonded interactions |
| CNonBondedInteractionsSectionParser | |
| CNonBondedInteractionType | NonBondedInteractionType class is responsible for keeping track of static (unchanging) parameters for explicit non-bonded interactions |
| CNonBondedInteractionTypeProperties | |
| CNonNegativeConstraint | |
| CNonPositiveConstraint | |
| CNonZeroConstraint | |
| CNoStatus | No status |
| CNotEmptyConstraint | |
| CNotParamConstraint | |
| CNPA | Constant normal pressure and lateral surface area integrator No thermostat! |
| CNPAT | Constant normal pressure and lateral surface area integrator |
| CNPrT | Constant normal pressure and lateral surface tension integrator |
| CNPT | |
| CNPTf | |
| CNPTi | |
| CNPTsz | A utility integrator (much like NPTxyz) but which keeps the relative scaling of x & y fixed |
| CNPTxyz | |
| CNumberR | |
| CNumberZ | |
| CNVE | |
| CNVT | Basic thermostating via Hoover, Phys.Rev.A, 1985, Vol |
| CObjectACF | |
| CObjectCCF | |
| CObjectCount | |
| CObjectRestraint | ObjectRestraint is the basic harmonic restraint for the degrees of freedom of a StuntDouble |
| Cogzstream | |
| COHFrequencyMap | |
| COnsagerCorrFunc | |
| COpenMDBitSet | OpenMDBitSet is a wrapper class of std::vector<bool> to act as a growable std::bitset |
| COpenMDException | |
| COplsTorsionType | These torsion types are defined identically with functional form given in the following paper: |
| COptimizationBuilder | |
| COptimizationCreator | |
| COptimizationFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an Optimization |
| COptionSectionParser | "io/OptionSectionParser.hpp" |
| COrderParameterProbZ | |
| COrParamConstraint | |
| CP2OrderParameter | |
| CP2R | |
| CP2Z | |
| CPairList | PairList class maintains a general purpose list of atom pairs using the global indices of the atoms |
| CpAngle | |
| CParamConstraintFacade | This class allows to recognize constraint predicates, so that they can be combined using composition operators |
| CPipeDensity | |
| CPlan | |
| CPolarizableAdapter | |
| CPolarizableAtomTypesSectionParser | |
| CPolarizableAtypeParameters | |
| CPolynomial | A generic Polynomial class |
| CPolynomialBendType | "types/PolynomialBendType.hpp" |
| CPolynomialBondType | "types/PolynomialBondType.hpp" |
| CPolynomialInversionType | "types/PolynomialInversionType.hpp" |
| CPolynomialTorsionType | "types/PolynomialTorsionType.hpp" |
| CPositionZ | |
| CPositiveConstraint | |
| CPotDiff | Potential Energy differences with charges turned off |
| CPotentialEnergyObjectiveFunction | |
| CPotVecAccumulator | |
| CPrepareVisitor | |
| CProgressBar | |
| CPropertyMap | PropertyMap class maintains a list of GenericData |
| CQsurf | Tetrahedral order parameter Q field, output frame-by-frame as OpenDX volumetric data files |
| CQuarticBendType | |
| CQuarticBondType | |
| CQuarticTorsionType | |
| CQuaternion | Quaternion is a sort of a higher-level complex number |
| CRadialDistrFunc | Radial Distribution Function |
| CRattle | Velocity Verlet Constraint Algorithm |
| CRBCOMVisitor | |
| CRCorrFunc | |
| CRCorrFuncR | |
| CRCorrFuncZ | |
| CRealSphericalHarmonic | |
| CRealSymmetricTridiagonal | Computes eigenvalues and eigenvectors of a real (non-complex) symmetric tridiagonal matrix by the QL method |
| CRectMatrix | Rectangular matrix class |
| CRegularCuboctahedron | |
| CRegularDecahedron | |
| CReplacementVisitor | Replaces an atomic object with a collection atomic sites |
| CReplicateVisitor | |
| CRepulsivePower | |
| CRepulsivePowerInteractionType | RepulsivePowerInteractionType is one of the basic interaction types |
| CRestraint | |
| CRestraintForceModifier | |
| CRestraintStamp | |
| CRestReader | |
| CRestWriter | |
| CRevision | |
| CRhoR | |
| CRhoZ | |
| CRigidBody | |
| CRigidBodyStamp | |
| CRippleOP | |
| CRMSD | |
| CRNEMDR | |
| CRNEMDRTheta | |
| CRNEMDZ | |
| CRotAngleDisplacement | |
| CRotationAlgorithm | Abstract class for rotation |
| CRoughShell | |
| CRPInteractionData | |
| CRPYMobility | |
| CSameSectionParserFunctor | |
| CSC | |
| CSCAtomData | |
| CSCAtomTypesSectionParser | "io/SCAtomTypesSectionParser.hpp" |
| CSCAtypeParameters | |
| CSCDElem | |
| CSCDOrderParameter | |
| CSCInteractionData | |
| CSCLattice | |
| CSCN | Secondary Coordinate Number |
| CSDKBend | |
| CSDKBendType | |
| CSDShape | |
| CSDVelocityField | |
| CSectionParser | |
| CSectionParserContext | |
| CSectionParserManager | "io/SectionParserManager.hpp" SectionParserManager maintains a priority list |
| CSelectionCompiler | "selection/SelectionCompiler.hpp" |
| CSelectionCorrFunc | |
| CSelectionEvaluator | "selection/SelectionEvaluator" |
| CSelectionManager | |
| CSelectionSet | |
| CSelfData | The SelfData struct |
| CSequentialAnalyzer | "applications/sequentialProps/SequentialAnalyzer" |
| CSFG | Computes the vibrational SFG susceptibility spectrum Im χ²(ω) in the OH-stretch region using the exciton Hamiltonian approach with an ADIABATIC quantum propagator |
| CSFGTimeAvg | Computes vibrational SFG spectra in the OH-stretch region using the TIME-AVERAGING APPROXIMATION (TAA) of Auer & Skinner, rather than the dynamical adiabatic-propagator method implemented in the SFG dynamic property |
| CShake | |
| CShape | |
| CShapeAtomType | |
| CShapeAtomTypesSectionParser | |
| CShapeBuilder | |
| CshapedLattice | Returns a vector of vector3 position on a lattice truncated |
| CshapedLatticeEllipsoid | Implements an ellipsoid-shaped lattice |
| CshapedLatticePentRod | Implements a spherically-capped rod-shaped lattice |
| CshapedLatticeRod | Implements a spherically-capped rod-shaped lattice |
| CshapedLatticeSpherical | Implements a spherical lattice |
| CSHAPES | |
| CShellStatistics | |
| CShiftedMieBondType | ShiftedMieBondType is used to correct 1-3 bend interactions in the SDK force field |
| CShortRangeInteraction | A ShortRangeInteraction holds some bookeeping data for bonded interactions (e.g |
| CSimCreator | The only responsibility of SimCreator is to parse the meta-data file and create a SimInfo instance based on the information returned by parser |
| CSimInfo | One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the current simulation |
| CSimplePreprocessor | |
| CSimpleTypeData | SimpleTypeData class is a POD repository class |
| CSimSnapshotManager | "brains/SimSnapshotManager.hpp" |
| CSlabStatistics | |
| CSnapshot | Repository storing dynamic data during a Simulation |
| CSnapshotManager | SnapshotManager class is an abstract class which maintains a series of snapshots |
| CSpatialStatistics | |
| CSPFData | Storage specific to the SPF-RNEMD method that allows for a new simulation to pick up where an old one left off |
| CSphere | |
| CSphericalHarmonic | |
| CSquareMatrix | A square matrix class |
| CSquareMatrix3 | |
| CSSDAtomVisitor | |
| CStaticAnalyser | |
| COutputData | |
| CStats | |
| CStatsData | |
| CStatusFunction | |
| CStatWriter | A configurable Statistics Writer |
| CSticky | |
| CStickyAdapter | |
| CStickyAtomTypesSectionParser | "io/StickyAtomTypesSectionParser.hpp" |
| CStickyAtypeParameters | |
| CStickyInteractionData | |
| CStickyPowerAtomTypesSectionParser | StickyPowerAtomTypesSectionParser.hpp "io/StickyAtomTypesSectionParser.hpp" |
| CStrangFixCowperTriangleQuadratureRule | |
| CStressCorrFunc | |
| CStringTokenizer | The string tokenizer class allows an application to break a string into tokens The set of delimiters (the characters that separate tokens) may be specified either at creation time or on a per-token basis |
| CStuntDouble | "Don't move, or you're dead! Stand up! Captain, we've got them!" |
| CSurfaceDiffusion | |
| CSuttonChenAdapter | |
| CSwitchingFunction | |
| CSystemACF | |
| CSystemCCF | |
| CSystemDecomposition | SystemDecomposition is an interface for passing out and collecting information from many processors for use during integration and computation of physical properties |
| CSystemDipoleCorrFunc | |
| CTetrahedralityHBMatrix | Tetrahedrality Hydrogen Bonding Matrix |
| CTetrahedralityParam | Tetrahedrality Parameter |
| CTetrahedralityParamDens | Tetrahedrality ParameterDens |
| CTetrahedralityParamR | Tetrahedrality ParameterR |
| CTetrahedralityParamRAngle | Tetrahedrality ParameterRAngle |
| CTetrahedralityParamXYZ | Tetrahedrality Parameter XYZ |
| CTetrahedralityParamZ | Tetrahedrality ParameterZ |
| CThermo | |
| CThermoIntegrationForceModifier | |
| CThetaCorrFunc | |
| CTimeCorrFunc | Computes a correlation function by scanning a trajectory once to precompute quantities to be correlated |
| CToken | |
| CTokenMap | |
| CTorForCorrFunc | |
| CTorqueAutoCorrFunc | |
| CTorsion | |
| CTorsionData | |
| CTorsionDataSet | |
| CTorsionStamp | |
| CTorsionType | |
| CTorsionTypeParser | "types/TorsionTypeParser.hpp" |
| CTorsionTypesSectionParser | "io/TorsionTypesSectionParser.hpp" |
| CTranslationalOrderParamZ | TranslationalOrder ParameterZ |
| CTrappeTorsionType | "types/TrappeTorsionType.hpp" These torsion types are defined identically with functional form given in the following paper: |
| CTreeNode | |
| CTriangle | Triangle provides geometric data to OpenMD |
| CTriangleQuadrature | A class for integrating a function using numerical quadrature over triangular domains |
| CTriangleQuadratureRule | A "rule" (weights and quadrature points) for computing quadrature over triangular domains |
| CTruncatedCube | |
| CTwoDGofR | |
| CTypeContainer | |
| CUFFAdapter | |
| CUFFAtomTypesSectionParser | |
| CUFFAtypeParameters | |
| CUniformField | Applies a uniform (vector) electric field to the system |
| CUniformGradient | Applies a uniform electric field gradient to the system |
| CUreyBradleyBend | |
| CUreyBradleyBendType | |
| CVanDerWaalsInteraction | The basic interface for van der Waals interactions |
| CVCorrFunc | |
| CVCorrFuncR | |
| CVCorrFuncZ | |
| CVector | Fix length vector class |
| CVector2 | |
| CVector3 | |
| CVectorAccumulator | |
| CVectorTypeData | |
| CVelAngularVelOutProdCorrFunc | |
| CVelocitizer | Velocity-modifying routines |
| CVelocityAutoOutProductCorrFunc | |
| CVelocityField | A linear (homogeneous) ambient velocity field, v(r) = v0 + K . r |
| CVelocityVerletIntegrator | |
| CVelocityZ | |
| CWaterTypeVisitor | |
| CWCorrFunc | |
| CWrappingVisitor | |
| CXYZAtom | |
| CXYZFormat | |
| CXYZVisitor | |
| CZconsData | |
| CZConsReader | |
| CZConsStamp | |
| CZConstraintForceModifier | |
| CZconstraintMol | |
| CZconstraintParam | |
| CZConsVisitor | |
| CZConsWriter | |
| CZeroConstraint | |
| CZhouParameters | |
| NQuantLib | |
| CArmijoLineSearch | Armijo line search |
| CBFGS | Broyden-Fletcher-Goldfarb-Shanno algorithm |
| CBoundaryConstraint | Constraint imposing all arguments to be in [low,high] |
| CCompositeConstraint | Constraint enforcing both given sub-constraints |
| CConjugateGradient | Multi-dimensional Conjugate Gradient class |
| CConstraint | Base constraint class |
| CImpl | Base class for constraint implementations |
| CEndCriteria | Criteria to end optimization process: |
| CLineSearch | Base class for line search |
| CLineSearchBasedMethod | |
| CNoConstraint | No constraint |
| CObjectiveFunction | Objective function abstract class for optimization problem |
| COptimizationMethod | Abstract class for constrained optimization method |
| CParametersTransformation | |
| CPositiveConstraint | Constraint imposing positivity to all arguments |
| CProblem | Constrained optimization problem |
| CSteepestDescent | Multi-dimensional steepest-descent class |
| Ccmdline_parser_params | The additional parameters to pass to parser functions |
| CDynamicRectMatrix | Rectangular matrix class with contiguous flat storage |
| CDynamicVector | Dynamically-sized vector class |
| CerrorStruct | |
| CFilenameObserver | |
| Cgengetopt_args_info | Where the command line options are stored |
| CGrid3d | A generic 3d grid class |
| COMDBaseListener | This class provides an empty implementation of OMDListener, which can be extended to create a listener which only needs to handle a subset of the available methods |
| COMDBaseVisitor | This class provides an empty implementation of OMDVisitor, which can be extended to create a visitor which only needs to handle a subset of the available methods |
| COMDLexer | |
| COMDListener | This interface defines an abstract listener for a parse tree produced by OMDParser |
| COMDParser | |
| COmdfileContext | |
| CStatementContext | |
| CAssignmentContext | |
| CConstantContext | |
| CComponentblockContext | |
| CZconstraintblockContext | |
| CRestraintblockContext | |
| CFlucqblockContext | |
| CRnemdblockContext | |
| CLightblockContext | |
| CVelocityfieldblockContext | |
| CMinimizerblockContext | |
| CMoleculeblockContext | |
| CMoleculestatementContext | |
| CAtomblockContext | |
| CAtomstatementContext | |
| CBondblockContext | |
| CBondstatementContext | |
| CBendblockContext | |
| CBendstatementContext | |
| CTorsionblockContext | |
| CTorsionstatementContext | |
| CInversionblockContext | |
| CInversionstatementContext | |
| CRigidbodyblockContext | |
| CRigidbodystatementContext | |
| CCutoffgroupblockContext | |
| CCutoffgroupstatementContext | |
| CNodesblockContext | |
| CNodesstatementContext | |
| CFragmentblockContext | |
| CFragmentstatementContext | |
| CConstraintblockContext | |
| CConstraintstatementContext | |
| CSequencestringContext | |
| CDoubleNumberTupleContext | |
| CInttupleContext | |
| CIntConstContext | |
| CDoubleNumberContext | |
| CFloatConstContext | |
| CVectorConstContext | |
| COMDTreeVisitor | |
| COMDVisitor | This class defines an abstract visitor for a parse tree produced by OMDParser |
| CParameter | |
| CParameterBase | |
| CParameterTraits | |
| CParameterTraits< bool > | |
| CParameterTraits< int > | |
| CParameterTraits< RealType > | |
| CParameterTraits< std::pair< int, int > > | |
| CParameterTraits< std::string > | |
| CParameterTraits< std::vector< RealType > > | |
| CParameterTraits< unsigned long int > | |
| CSimplePreprocessor | A simple preprocessor |
| CSTLContainerTypeData | STL container type generic data which is associated with an id |
| CWildcard | |
1.17.0