OpenMD
3.1
Molecular Dynamics in the Open
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Class Index
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B
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C
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D
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E
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F
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G
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H
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I
|
K
|
L
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M
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N
|
O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
A
Accumulator
(
OpenMD
)
Accumulator
(OpenMD::Utils)
Accumulator< Mat3x3d >
(OpenMD::Utils)
Accumulator< std::vector< RealType > >
(OpenMD::Utils)
Accumulator< Vector< RealType, Dim > >
(OpenMD::Utils)
AccumulatorView
(OpenMD::Utils)
AccumulatorView< Mat3x3dAccumulator >
(OpenMD::Utils)
AccumulatorView< PotVecAccumulator >
(OpenMD::Utils)
AccumulatorView< RealAccumulator >
(OpenMD::Utils)
AccumulatorView< StdVectorAccumulator >
(OpenMD::Utils)
AccumulatorView< Vector3dAccumulator >
(OpenMD::Utils)
ActionCorrFunc
(
OpenMD
)
AlphaHull
(
OpenMD
)
AlphaHullFinder
(
OpenMD
)
AmberImproperTorsionType
(
OpenMD
)
AnalyticalModel
(
OpenMD
)
AndParamConstraint
(
OpenMD
)
AngleR
(
OpenMD
)
AngularVelocityAutoOutProductCorrFunc
(
OpenMD
)
AngularVelVelOutProdCorrFunc
(
OpenMD
)
ANTLRException
(antlr)
ApproximateModel
(
OpenMD
)
ArmijoLineSearch
(QuantLib)
AST
(antlr)
ASTArray
(antlr)
ASTFactory
(antlr)
ASTNULLType
(antlr)
ASTPair
(antlr)
ASTRef
(antlr)
ASTRefCount
(antlr)
Atom
(
OpenMD
)
AtomData
(
OpenMD
)
AtomicBeadModel
(
OpenMD
)
AtomInfo
(
OpenMD
)
AtomNameVisitor
(
OpenMD
)
AtomStamp
(
OpenMD
)
AtomType
(
OpenMD
)
AtomTypeCompare
(
OpenMD
)
AtomTypesSectionParser
(
OpenMD
)
AutoCorrFunc
(
OpenMD
)
B
BAOAB
(
OpenMD
)
BaseAccumulator
(
OpenMD
)
BaseAccumulator
(OpenMD::Utils)
BaseAST
(antlr)
BaseAtomTypesSectionParser
(
OpenMD
)
BaseAtomVisitor
(
OpenMD
)
BaseRigidBodyVisitor
(
OpenMD
)
BaseVisitor
(
OpenMD
)
basic_teebuf
(
OpenMD
)
BCCLattice
(
OpenMD
)
BeadModel
(
OpenMD
)
Bend
(
OpenMD
)
BendData
(
OpenMD
)
BendDataSet
(
OpenMD
)
BendStamp
(
OpenMD
)
BendType
(
OpenMD
)
BendTypeParser
(
OpenMD
)
BendTypesSectionParser
(
OpenMD
)
BFGS
(QuantLib)
BitSet
(antlr)
BlockSnapshotManager
(
OpenMD
)
Bond
(
OpenMD
)
BondAngleDistribution
(
OpenMD
)
BondCorrFunc
(
OpenMD
)
BondOrderParameter
(
OpenMD
)
BondStamp
(
OpenMD
)
BondType
(
OpenMD
)
BondTypeParser
(
OpenMD
)
BondTypesSectionParser
(
OpenMD
)
BOPofR
(
OpenMD
)
BoundaryConstraint
(QuantLib)
BoundaryElementModel
(
OpenMD
)
BoxObjectiveFunction
(
OpenMD
)
Buckingham
(
OpenMD
)
BuckinghamInteractionData
(
OpenMD
)
BuckinghamInteractionType
(
OpenMD
)
C
CenterOfMass
(
OpenMD
)
CharBuffer
(antlr)
ChargeAtomTypesSectionParser
(
OpenMD
)
ChargeDensityZ
(
OpenMD
)
ChargeField
(
OpenMD
)
ChargeHistogram
(
OpenMD
)
ChargeKineticCorrFunc
(
OpenMD
)
ChargeOrientationCorrFunc
(
OpenMD
)
ChargeR
(
OpenMD
)
ChargeZ
(
OpenMD
)
CharInputBuffer
(antlr)
CharmmTorsionParameter
(
OpenMD
)
CharmmTorsionType
(
OpenMD
)
CharScanner
(antlr)
CharScannerLiteralsLess
(antlr)
CharStreamException
(antlr)
CharStreamIOException
(antlr)
ChebyshevT
(
OpenMD
)
ChebyshevU
(
OpenMD
)
ci_char_traits
(OpenMD::Utils)
CircularQueue
(antlr)
cmdline_parser_params
COHZ
(
OpenMD
)
CollectiveDipoleDisplacement
(
OpenMD
)
CommonAST
(antlr)
CommonASTWithHiddenTokens
(antlr)
CommonHiddenStreamToken
(antlr)
CommonToken
(antlr)
Communicator
(
OpenMD
)
Comparator
(
OpenMD
)
Component
(
OpenMD
)
CompositeConstraint
(QuantLib)
CompositeShape
(
OpenMD
)
CompositeVisitor
(
OpenMD
)
COMVel
(
OpenMD
)
ConjugateGradient
(QuantLib)
Constraint
(QuantLib)
ConstraintData
(
OpenMD
)
ConstraintElem
(
OpenMD
)
ConstraintPair
(
OpenMD
)
ConstraintStamp
(
OpenMD
)
ConstraintWriter
(
OpenMD
)
ContactAngle1
(
OpenMD
)
ContactAngle2
(
OpenMD
)
ContainsConstraint
(
OpenMD
)
ConvexHull
(
OpenMD
)
CoordinationNumber
(
OpenMD
)
CosineBendType
(
OpenMD
)
CosineSeriesBendType
(
OpenMD
)
CrossCorrFunc
(
OpenMD
)
CubicBendType
(
OpenMD
)
CubicBondType
(
OpenMD
)
CubicLattice
(
OpenMD
)
CubicSpline
(
OpenMD
)
CubicTorsionType
(
OpenMD
)
Cuboctahedron
(
OpenMD
)
CurlingStoneDecahedron
(
OpenMD
)
CurrentDensity
(
OpenMD
)
CurrentDensityAutoCorrFunc
(
OpenMD
)
CutoffGroup
(
OpenMD
)
CutoffGroupStamp
(
OpenMD
)
D
DataHolder
(
OpenMD
)
DataStorage
(
OpenMD
)
Decahedron
(
OpenMD
)
DefaultAtomVisitor
(
OpenMD
)
TokenStreamRewriteEngine::DeleteOp
(antlr)
DensityField
(
OpenMD
)
DensityHistogram
(
OpenMD
)
DensityPlot
(
OpenMD
)
DipoleCorrFunc
(
OpenMD
)
DipoleField
(
OpenMD
)
DipoleOrientation
(
OpenMD
)
DirectionalAdapter
(
OpenMD
)
DirectionalAtom
(
OpenMD
)
DirectionalAtomTypesSectionParser
(
OpenMD
)
DirectionalAtypeParameters
(
OpenMD
)
DirectionalRCorrFunc
(
OpenMD
)
Displacement
(
OpenMD
)
DisplacementZ
(
OpenMD
)
DistanceFinder
(
OpenMD
)
DLM
(
OpenMD
)
DumpReader
(
OpenMD
)
DumpStatusFunction
(
OpenMD
)
DumpWriter
(
OpenMD
)
DynamicProperty
(
OpenMD
)
DynamicRectMatrix
(
OpenMD
)
DynamicVector
(
OpenMD
)
E
EAM
(
OpenMD
)
EAMAdapter
(
OpenMD
)
EAMAtomData
(
OpenMD
)
EAMAtomTypesSectionParser
(
OpenMD
)
EAMInteractionData
(
OpenMD
)
EAMInteractionType
(
OpenMD
)
EAMParameters
(
OpenMD
)
Eigenvalue
(JAMA)
Electrostatic
(
OpenMD
)
ElectrostaticAtomData
(
OpenMD
)
ElectrostaticInteraction
(
OpenMD
)
Element
(
OpenMD
)
ElementsTable
(
OpenMD
)
Ellipsoid
(
OpenMD
)
EndCriteria
(QuantLib)
EnergyCorrFunc
(
OpenMD
)
EqualConstraint
(
OpenMD
)
EqualIgnoreCaseConstraint
(
OpenMD
)
Equipartition
(
OpenMD
)
errorStruct
EvenConstraint
(
OpenMD
)
TokenStreamRewriteEngine::executeOperation
(antlr)
F
FCCLattice
(
OpenMD
)
FCCOfR
(
OpenMD
)
Field
(
OpenMD
)
FilenameObserver
FixedBondType
(
OpenMD
)
FixedChargeAdapter
(
OpenMD
)
FixedChargeAtypeParameters
(
OpenMD
)
FluctuatingAtypeParameters
(
OpenMD
)
FluctuatingChargeAdapter
(
OpenMD
)
FluctuatingChargeAtomData
(
OpenMD
)
FluctuatingChargeAtomTypesSectionParser
(
OpenMD
)
FluctuatingChargeConstraints
(
OpenMD
)
FluctuatingChargeDamped
(
OpenMD
)
FluctuatingChargeForces
(
OpenMD
)
FluctuatingChargeLangevin
(
OpenMD
)
FluctuatingChargeNVE
(
OpenMD
)
FluctuatingChargeNVT
(
OpenMD
)
FluctuatingChargeObjectiveFunction
(
OpenMD
)
FluctuatingChargeParameters
(
OpenMD
)
FluctuatingChargePropagator
(
OpenMD
)
ForceAutoCorrFunc
(
OpenMD
)
ForceDecomposition
(
OpenMD
)
ForceField
(
OpenMD
)
ForceFieldOptions
(
OpenMD
)
ForceManager
(
OpenMD
)
ForceMatrixDecomposition
(
OpenMD
)
ForceModifier
(
OpenMD
)
ForTorCorrFunc
(
OpenMD
)
FragmentStamp
(
OpenMD
)
FrameData
(
OpenMD
)
FrameTimeCorrFunc
(
OpenMD
)
FreqFlucCorrFunc
(
OpenMD
)
FuncflParameters
(
OpenMD
)
G
GaussianTriangleQuadratureRule
(
OpenMD
)
GayBerneAdapter
(
OpenMD
)
GayBerneAtomTypesSectionParser
(
OpenMD
)
GB
(
OpenMD
)
GBAtypeParameters
(
OpenMD
)
GBheadVisitor
(
OpenMD
)
GBInteractionData
(
OpenMD
)
GBtailVisitor
(
OpenMD
)
GCN
(
OpenMD
)
GCNSeq
(
OpenMD
)
GenericData
(
OpenMD
)
GenericFactory
(
OpenMD
)
gengetopt_args_info
GhostBend
(
OpenMD
)
GhostTorsion
(
OpenMD
)
Globals
(
OpenMD
)
GofAngle2
(
OpenMD
)
GofR
(
OpenMD
)
GofRAngle
(
OpenMD
)
GofRAngle2
(
OpenMD
)
GofROmega
(
OpenMD
)
GofRTheta
(
OpenMD
)
GofRZ
(
OpenMD
)
GofXyz
(
OpenMD
)
GofZ
(
OpenMD
)
GreaterThanConstraint
(
OpenMD
)
GreaterThanOrEqualTo
(
OpenMD
)
Grid3D
(
OpenMD
)
Grid3d
gzstreambase
(
OpenMD
)
gzstreambuf
(
OpenMD
)
H
HarmonicBendType
(
OpenMD
)
HarmonicBondType
(
OpenMD
)
HarmonicInversionType
(
OpenMD
)
HarmonicSineBendType
(
OpenMD
)
HarmonicTorsionType
(
OpenMD
)
Molecule::HBondDonor
(
OpenMD
)
HBondGeometric
(
OpenMD
)
HBondJump
(
OpenMD
)
HBondJumpR
(
OpenMD
)
HBondJumpZ
(
OpenMD
)
HBondPersistence
(
OpenMD
)
HBondR
(
OpenMD
)
HBondRvol
(
OpenMD
)
HBondZ
(
OpenMD
)
HBondZvol
(
OpenMD
)
Hull
(
OpenMD
)
HullFinder
(
OpenMD
)
Hxy
(
OpenMD
)
HydrodynamicsElement
(
OpenMD
)
HydrodynamicsModel
(
OpenMD
)
HydrodynamicsModelBuilder
(
OpenMD
)
HydrodynamicsModelCreator
(
OpenMD
)
HydrodynamicsModelFactory
(
OpenMD
)
HydrogenBondingInteraction
(
OpenMD
)
HydroIO
(
OpenMD
)
HydroProp
(
OpenMD
)
I
IcosahedralOfR
(
OpenMD
)
Icosahedron
(
OpenMD
)
ifstrstream
(
OpenMD
)
igzstream
(
OpenMD
)
Constraint::Impl
(QuantLib)
ImproperCosineInversionParameter
(
OpenMD
)
ImproperCosineInversionType
(
OpenMD
)
IndexFinder
(
OpenMD
)
IndexListContainer
(
OpenMD
)
InoDecahedron
(
OpenMD
)
InputBuffer
(antlr)
TokenStreamRewriteEngine::InsertBeforeOp
(antlr)
Integrator
(
OpenMD
)
IntegratorBuilder
(
OpenMD
)
IntegratorCreator
(
OpenMD
)
IntegratorFactory
(
OpenMD
)
InteractionData
(
OpenMD
)
InteractionManager
(
OpenMD
)
InteractionTimeCorrFunc
(
OpenMD
)
InversePowerSeries
(
OpenMD
)
InversePowerSeriesInteractionData
(
OpenMD
)
InversePowerSeriesInteractionType
(
OpenMD
)
Inversion
(
OpenMD
)
InversionData
(
OpenMD
)
InversionDataSet
(
OpenMD
)
InversionStamp
(
OpenMD
)
InversionType
(
OpenMD
)
InversionTypeParser
(
OpenMD
)
InversionTypesSectionParser
(
OpenMD
)
IOException
(antlr)
is_container
(OpenMD::Utils::details)
is_container< T, std::void_t< typename T::value_type, typename T::reference, typename T::const_reference, typename T::iterator, typename T::const_iterator, typename T::difference_type, typename T::size_type, decltype(std::declval< T >().begin()), decltype(std::declval< T >().end()), decltype(std::declval< T >().cbegin()), decltype(std::declval< T >().cend()), decltype(std::declval< T >().max_size()), decltype(std::declval< T >().empty())> >
(OpenMD::Utils::details)
K
Kirkwood
(
OpenMD
)
KirkwoodBuff
(
OpenMD
)
KirkwoodQuadrupoles
(
OpenMD
)
L
LangevinDynamics
(
OpenMD
)
LangevinHullDynamics
(
OpenMD
)
LangevinHullForceModifier
(
OpenMD
)
LangevinPiston
(
OpenMD
)
Lattice
(
OpenMD
)
LatticeBuilder
(
OpenMD
)
LatticeCreator
(
OpenMD
)
LatticeFactory
(
OpenMD
)
LDForceModifier
(
OpenMD
)
LegendreCorrFunc
(
OpenMD
)
LegendreCorrFuncZ
(
OpenMD
)
LegendreGauss1d
(
OpenMD
)
LegendreGauss1dParams
(
OpenMD
)
LegendrePolynomial
(
OpenMD
)
LennardJonesAdapter
(
OpenMD
)
LennardJonesAtomTypesSectionParser
(
OpenMD
)
LennardJonesInteractionType
(
OpenMD
)
LessThanConstraint
(
OpenMD
)
LessThanOrEqualToConstraint
(
OpenMD
)
LessThanPeriodicityFunctor
(
OpenMD
)
LexerInputState
(antlr)
Light
(OpenMD::Perturbations)
LightParameters
(OpenMD::Perturbations)
LineSearch
(QuantLib)
LineSearchBasedMethod
(QuantLib)
LipidHeadVisitor
(
OpenMD
)
LipidTransVisitor
(
OpenMD
)
LJ
(
OpenMD
)
LJAtypeParameters
(
OpenMD
)
LJInteractionData
(
OpenMD
)
LLkParser
(antlr)
LocalIndexManager
(
OpenMD
)
M
MagneticField
(
OpenMD
)
MassDensityR
(
OpenMD
)
MassDensityZ
(
OpenMD
)
MatrixAccumulator
(
OpenMD
)
MAW
(
OpenMD
)
MAWInteractionData
(
OpenMD
)
MAWInteractionType
(
OpenMD
)
MDLexer
MDParser
MDTreeParser
MeanDisplacement
(
OpenMD
)
Mesh
(
OpenMD
)
MetallicInteraction
(
OpenMD
)
MethodFactory
(OpenMD::RNEMD)
Mie
(
OpenMD
)
MieInteractionData
(
OpenMD
)
MieInteractionType
(
OpenMD
)
MinimizerParameters
(
OpenMD
)
MismatchedCharException
(antlr)
MismatchedTokenException
(antlr)
MolecularRestraint
(
OpenMD
)
Molecule
(
OpenMD
)
MoleculeACF
(
OpenMD
)
MoleculeCCF
(
OpenMD
)
MoleculeCount
(
OpenMD
)
MoleculeCreator
(
OpenMD
)
MoleculeStamp
(
OpenMD
)
MoLocator
(
OpenMD
)
MomAngMomCorrFunc
(
OpenMD
)
MomentData
(
OpenMD
)
MomentumCorrFunc
(
OpenMD
)
MomentumHistogram
(
OpenMD
)
Morse
(
OpenMD
)
MorseBondType
(
OpenMD
)
MorseInteractionData
(
OpenMD
)
MorseInteractionType
(
OpenMD
)
MPFrameTimeCorrFunc
(
OpenMD
)
MPITraits
(
OpenMD
)
MPITraits< RectMatrix< T, R, C > >
(
OpenMD
)
MPITraits< SquareMatrix3< T > >
(
OpenMD
)
MPITraits< Vector3< T > >
(
OpenMD
)
MPITraits< Vector< T, Dim > >
(
OpenMD
)
MSMSFormat
(
OpenMD
)
MultiComponentRDF
(
OpenMD
)
MultipassCorrFunc
(
OpenMD
)
MultipoleAdapter
(
OpenMD
)
MultipoleAtomTypesSectionParser
(
OpenMD
)
MultipoleAtypeParameters
(
OpenMD
)
MultipoleSum
(
OpenMD
)
N
NameFinder
(
OpenMD
)
NanoLength
(
OpenMD
)
NanoVolume
(
OpenMD
)
NegativeConstraint
(
OpenMD
)
NgammaT
(
OpenMD
)
NitrileFrequencyMap
(
OpenMD
)
NIVSMethod
(OpenMD::RNEMD)
NoConstraint
(QuantLib)
NodesStamp
(
OpenMD
)
NonBondedInteraction
(
OpenMD
)
NonBondedInteractionsSectionParser
(
OpenMD
)
NonBondedInteractionType
(
OpenMD
)
NonBondedInteractionTypeProperties
(
OpenMD
)
NonNegativeConstraint
(
OpenMD
)
NonPositiveConstraint
(
OpenMD
)
NonZeroConstraint
(
OpenMD
)
NoStatus
(
OpenMD
)
NotEmptyConstraint
(
OpenMD
)
NotParamConstraint
(
OpenMD
)
NoViableAltException
(antlr)
NoViableAltForCharException
(antlr)
NPA
(
OpenMD
)
NPAT
(
OpenMD
)
NPrT
(
OpenMD
)
NPT
(
OpenMD
)
NPTf
(
OpenMD
)
NPTi
(
OpenMD
)
NPTsz
(
OpenMD
)
NPTxyz
(
OpenMD
)
NumberR
(
OpenMD
)
NumberZ
(
OpenMD
)
NVE
(
OpenMD
)
NVT
(
OpenMD
)
O
ObjectACF
(
OpenMD
)
ObjectCCF
(
OpenMD
)
ObjectCount
(
OpenMD
)
ObjectiveFunction
(QuantLib)
ObjectRestraint
(
OpenMD
)
ogzstream
(
OpenMD
)
OnsagerCorrFunc
(
OpenMD
)
OpenMDBitSet
(
OpenMD
)
OpenMDException
(
OpenMD
)
OplsTorsionType
(
OpenMD
)
OptimizationBuilder
(
OpenMD
)
OptimizationCreator
(
OpenMD
)
OptimizationFactory
(
OpenMD
)
OptimizationMethod
(QuantLib)
OptionSectionParser
(
OpenMD
)
OrderParameterProbZ
(
OpenMD
)
OrParamConstraint
(
OpenMD
)
StaticAnalyser::OutputData
(
OpenMD
)
P
P2OrderParameter
(
OpenMD
)
P2R
(
OpenMD
)
P2Z
(
OpenMD
)
PairList
(
OpenMD
)
pAngle
(
OpenMD
)
ParamConstraintFacade
(
OpenMD
)
Parameter
ParameterBase
ParametersTransformation
(QuantLib)
ParameterTraits
ParameterTraits< bool >
ParameterTraits< int >
ParameterTraits< RealType >
ParameterTraits< std::pair< int, int > >
ParameterTraits< std::string >
ParameterTraits< std::vector< RealType > >
ParameterTraits< unsigned long int >
Parser
(antlr)
ParserInputState
(antlr)
ParticleTimeCorrFunc
(
OpenMD
)
PipeDensity
(
OpenMD
)
Plan
(
OpenMD
)
PolarizableAdapter
(
OpenMD
)
PolarizableAtomTypesSectionParser
(
OpenMD
)
PolarizableAtypeParameters
(
OpenMD
)
Polynomial
(
OpenMD
)
PolynomialBendType
(
OpenMD
)
PolynomialBondType
(
OpenMD
)
PolynomialInversionType
(
OpenMD
)
PolynomialTorsionType
(
OpenMD
)
PositionZ
(
OpenMD
)
PositiveConstraint
(
OpenMD
)
PositiveConstraint
(QuantLib)
PotDiff
(
OpenMD
)
PotentialEnergyObjectiveFunction
(
OpenMD
)
PotVecAccumulator
(
OpenMD
)
PrepareVisitor
(
OpenMD
)
Problem
(QuantLib)
ProgressBar
(
OpenMD
)
PropertyMap
(
OpenMD
)
Q
QR
(JAMA)
QuarticBendType
(
OpenMD
)
QuarticBondType
(
OpenMD
)
QuarticTorsionType
(
OpenMD
)
Quaternion
(
OpenMD
)
R
RadialDistrFunc
(
OpenMD
)
RandNumGen
(OpenMD::Utils)
Rattle
(
OpenMD
)
RBCOMVisitor
(
OpenMD
)
RCorrFunc
(
OpenMD
)
RCorrFuncR
(
OpenMD
)
RCorrFuncZ
(
OpenMD
)
RealSphericalHarmonic
(
OpenMD
)
RealSymmetricTridiagonal
(
OpenMD
)
RecognitionException
(antlr)
RectMatrix
(
OpenMD
)
RefCount
(antlr)
RegularCuboctahedron
(
OpenMD
)
RegularDecahedron
(
OpenMD
)
ReplacementVisitor
(
OpenMD
)
TokenStreamRewriteEngine::ReplaceOp
(antlr)
ReplicateVisitor
(
OpenMD
)
RepulsivePower
(
OpenMD
)
RepulsivePowerInteractionType
(
OpenMD
)
Restraint
(
OpenMD
)
RestraintForceModifier
(
OpenMD
)
RestraintStamp
(
OpenMD
)
RestReader
(
OpenMD
)
RestWriter
(
OpenMD
)
Revision
(
OpenMD
)
TokenStreamRewriteEngine::RewriteOperation
(antlr)
RhoR
(
OpenMD
)
RhoZ
(
OpenMD
)
RigidBody
(
OpenMD
)
RigidBodyStamp
(
OpenMD
)
RippleOP
(
OpenMD
)
RMSD
(
OpenMD
)
RNEMD
(OpenMD::RNEMD)
RNEMDParameters
(OpenMD::RNEMD)
RNEMDR
(
OpenMD
)
RNEMDRTheta
(
OpenMD
)
RNEMDZ
(
OpenMD
)
RotAngleDisplacement
(
OpenMD
)
RotationAlgorithm
(
OpenMD
)
RoughShell
(
OpenMD
)
RPInteractionData
(
OpenMD
)
S
SameSectionParserFunctor
(
OpenMD
)
SC
(
OpenMD
)
SCAtomData
(
OpenMD
)
SCAtomTypesSectionParser
(
OpenMD
)
SCAtypeParameters
(
OpenMD
)
SCDElem
(
OpenMD
)
SCDOrderParameter
(
OpenMD
)
SCInteractionData
(
OpenMD
)
SCLattice
(
OpenMD
)
SCN
(
OpenMD
)
SDKBend
(
OpenMD
)
SDKBendType
(
OpenMD
)
SDShape
(
OpenMD
)
SectionParser
(
OpenMD
)
SectionParserContext
(
OpenMD
)
SectionParserManager
(
OpenMD
)
SelectionCompiler
(
OpenMD
)
SelectionCorrFunc
(
OpenMD
)
SelectionEvaluator
(
OpenMD
)
SelectionManager
(
OpenMD
)
SelectionSet
(
OpenMD
)
SelfData
(
OpenMD
)
SemanticException
(antlr)
SequentialAnalyzer
(
OpenMD
)
Shake
(
OpenMD
)
Shape
(
OpenMD
)
ShapeAtomType
(
OpenMD
)
ShapeAtomTypesSectionParser
(
OpenMD
)
ShapeBuilder
(
OpenMD
)
shapedLattice
(
OpenMD
)
shapedLatticeEllipsoid
(
OpenMD
)
shapedLatticePentRod
(
OpenMD
)
shapedLatticeRod
(
OpenMD
)
shapedLatticeSpherical
(
OpenMD
)
SHAPES
(
OpenMD
)
ShellStatistics
(
OpenMD
)
ShiftedMieBondType
(
OpenMD
)
ShortRangeInteraction
(
OpenMD
)
SimCreator
(
OpenMD
)
SimInfo
(
OpenMD
)
SimplePreprocessor
(
OpenMD
)
SimplePreprocessor
SimpleTypeData
(
OpenMD
)
SimSnapshotManager
(
OpenMD
)
SlabStatistics
(
OpenMD
)
Snapshot
(
OpenMD
)
SnapshotManager
(
OpenMD
)
SpatialStatistics
(
OpenMD
)
SPFData
(
OpenMD
)
SPFDynamics
(
OpenMD
)
SPFForceManager
(OpenMD::RNEMD)
SPFMethod
(OpenMD::RNEMD)
Sphere
(
OpenMD
)
SphericalHarmonic
(
OpenMD
)
SquareMatrix
(
OpenMD
)
SquareMatrix3
(
OpenMD
)
SSDAtomVisitor
(
OpenMD
)
StaticAnalyser
(
OpenMD
)
Stats
(
OpenMD
)
Stats::StatsData
(
OpenMD
)
StatusFunction
(
OpenMD
)
StatWriter
(
OpenMD
)
SteepestDescent
(QuantLib)
Sticky
(
OpenMD
)
StickyAdapter
(
OpenMD
)
StickyAtomTypesSectionParser
(
OpenMD
)
StickyAtypeParameters
(
OpenMD
)
StickyInteractionData
(
OpenMD
)
StickyPowerAtomTypesSectionParser
(
OpenMD
)
STLContainerTypeData
StrangFixCowperTriangleQuadratureRule
(
OpenMD
)
StressCorrFunc
(
OpenMD
)
StringTokenizer
(
OpenMD
)
StuntDouble
(
OpenMD
)
SurfaceDiffusion
(
OpenMD
)
SuttonChenAdapter
(
OpenMD
)
SVD
(JAMA)
SwapMethod
(OpenMD::RNEMD)
SwitchingFunction
(
OpenMD
)
SystemACF
(
OpenMD
)
SystemCCF
(
OpenMD
)
SystemDecomposition
(
OpenMD
)
SystemDipoleCorrFunc
(
OpenMD
)
T
TetrahedralityHBMatrix
(
OpenMD
)
TetrahedralityParam
(
OpenMD
)
TetrahedralityParamDens
(
OpenMD
)
TetrahedralityParamR
(
OpenMD
)
TetrahedralityParamXYZ
(
OpenMD
)
TetrahedralityParamZ
(
OpenMD
)
Thermo
(
OpenMD
)
ThermoIntegrationForceModifier
(
OpenMD
)
ThetaCorrFunc
(
OpenMD
)
TimeCorrFunc
(
OpenMD
)
Token
(antlr)
Token
(
OpenMD
)
TokenBuffer
(antlr)
TokenMap
(
OpenMD
)
TokenRef
(antlr)
TokenRefCount
(antlr)
TokenStream
(antlr)
TokenStreamBasicFilter
(antlr)
TokenStreamException
(antlr)
TokenStreamHiddenTokenFilter
(antlr)
TokenStreamIOException
(antlr)
TokenStreamRecognitionException
(antlr)
TokenStreamRetryException
(antlr)
TokenStreamRewriteEngine
(antlr)
TokenStreamSelector
(antlr)
TokenStreamRewriteEngine::tokenToStream
(antlr)
TokenWithIndex
(antlr)
TorForCorrFunc
(
OpenMD
)
TorqueAutoCorrFunc
(
OpenMD
)
Torsion
(
OpenMD
)
TorsionData
(
OpenMD
)
TorsionDataSet
(
OpenMD
)
TorsionStamp
(
OpenMD
)
TorsionType
(
OpenMD
)
TorsionTypeParser
(
OpenMD
)
TorsionTypesSectionParser
(
OpenMD
)
CharScanner::Tracer
(antlr)
Parser::Tracer
(antlr)
TreeParser::Tracer
(antlr)
TranslationalOrderParamZ
(
OpenMD
)
TrappeTorsionType
(
OpenMD
)
TreeNode
(
OpenMD
)
TreeParser
(antlr)
TreeParserInputState
(antlr)
Triangle
(
OpenMD
)
TriangleQuadrature
(
OpenMD
)
TriangleQuadratureRule
(
OpenMD
)
TruncatedCube
(
OpenMD
)
TwoDGofR
(
OpenMD
)
TypeContainer
(
OpenMD
)
U
UFFAdapter
(
OpenMD
)
UFFAtomTypesSectionParser
(
OpenMD
)
UFFAtypeParameters
(
OpenMD
)
UniformField
(
OpenMD
)
UniformGradient
(
OpenMD
)
UreyBradleyBend
(
OpenMD
)
UreyBradleyBendType
(
OpenMD
)
V
VanDerWaalsInteraction
(
OpenMD
)
VCorrFunc
(
OpenMD
)
VCorrFuncR
(
OpenMD
)
VCorrFuncZ
(
OpenMD
)
Vector
(
OpenMD
)
Vector2
(
OpenMD
)
Vector3
(
OpenMD
)
VectorAccumulator
(
OpenMD
)
VectorTypeData
(
OpenMD
)
VelAngularVelOutProdCorrFunc
(
OpenMD
)
Velocitizer
(
OpenMD
)
VelocityAutoOutProductCorrFunc
(
OpenMD
)
VelocityField
(
OpenMD
)
VelocityVerletIntegrator
(
OpenMD
)
VelocityZ
(
OpenMD
)
VSSMethod
(OpenMD::RNEMD)
W
WaterTypeVisitor
(
OpenMD
)
WCorrFunc
(
OpenMD
)
Wildcard
WrappingVisitor
(
OpenMD
)
X
XYZAtom
(
OpenMD
)
XYZFormat
(
OpenMD
)
XYZVisitor
(
OpenMD
)
Z
ZconsData
(
OpenMD
)
ZConsReader
(
OpenMD
)
ZConsStamp
(
OpenMD
)
ZConstraintForceModifier
(
OpenMD
)
ZconstraintMol
(
OpenMD
)
ZconstraintParam
(
OpenMD
)
ZConsVisitor
(
OpenMD
)
ZConsWriter
(
OpenMD
)
ZeroConstraint
(
OpenMD
)
ZhouParameters
(
OpenMD
)
Generated on Wed Jun 26 2024 13:57:34 for OpenMD by
1.11.0