OpenMD 3.1
Molecular Dynamics in the Open
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Class Index
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A
Accumulator (OpenMD)
Accumulator (OpenMD::Utils)
Accumulator< Mat3x3d > (OpenMD::Utils)
Accumulator< std::vector< RealType > > (OpenMD::Utils)
Accumulator< Vector< RealType, Dim > > (OpenMD::Utils)
AccumulatorView (OpenMD::Utils)
AccumulatorView< Mat3x3dAccumulator > (OpenMD::Utils)
AccumulatorView< PotVecAccumulator > (OpenMD::Utils)
AccumulatorView< RealAccumulator > (OpenMD::Utils)
AccumulatorView< StdVectorAccumulator > (OpenMD::Utils)
AccumulatorView< Vector3dAccumulator > (OpenMD::Utils)
ActionCorrFunc (OpenMD)
AlphaHull (OpenMD)
AlphaHullFinder (OpenMD)
AmberImproperTorsionType (OpenMD)
AnalyticalModel (OpenMD)
AndParamConstraint (OpenMD)
AngleR (OpenMD)
AngularVelocityAutoOutProductCorrFunc (OpenMD)
AngularVelVelOutProdCorrFunc (OpenMD)
ANTLRException (antlr)
ApproximateModel (OpenMD)
ArmijoLineSearch (QuantLib)
AST (antlr)
ASTArray (antlr)
ASTFactory (antlr)
ASTNULLType (antlr)
ASTPair (antlr)
ASTRef (antlr)
ASTRefCount (antlr)
Atom (OpenMD)
AtomData (OpenMD)
AtomicBeadModel (OpenMD)
AtomInfo (OpenMD)
AtomNameVisitor (OpenMD)
AtomStamp (OpenMD)
AtomType (OpenMD)
AtomTypeCompare (OpenMD)
AtomTypesSectionParser (OpenMD)
AutoCorrFunc (OpenMD)
B
BAOAB (OpenMD)
BaseAccumulator (OpenMD)
BaseAccumulator (OpenMD::Utils)
BaseAST (antlr)
BaseAtomTypesSectionParser (OpenMD)
BaseAtomVisitor (OpenMD)
BaseRigidBodyVisitor (OpenMD)
BaseVisitor (OpenMD)
basic_teebuf (OpenMD)
BCCLattice (OpenMD)
BeadModel (OpenMD)
Bend (OpenMD)
BendData (OpenMD)
BendDataSet (OpenMD)
BendStamp (OpenMD)
BendType (OpenMD)
BendTypeParser (OpenMD)
BendTypesSectionParser (OpenMD)
BFGS (QuantLib)
BitSet (antlr)
BlockSnapshotManager (OpenMD)
Bond (OpenMD)
BondAngleDistribution (OpenMD)
BondCorrFunc (OpenMD)
BondOrderParameter (OpenMD)
BondStamp (OpenMD)
BondType (OpenMD)
BondTypeParser (OpenMD)
BondTypesSectionParser (OpenMD)
BOPofR (OpenMD)
BoundaryConstraint (QuantLib)
BoundaryElementModel (OpenMD)
BoxObjectiveFunction (OpenMD)
Buckingham (OpenMD)
BuckinghamInteractionData (OpenMD)
BuckinghamInteractionType (OpenMD)
C
CenterOfMass (OpenMD)
CharBuffer (antlr)
ChargeAtomTypesSectionParser (OpenMD)
ChargeDensityZ (OpenMD)
ChargeField (OpenMD)
ChargeHistogram (OpenMD)
ChargeKineticCorrFunc (OpenMD)
ChargeOrientationCorrFunc (OpenMD)
ChargeR (OpenMD)
ChargeZ (OpenMD)
CharInputBuffer (antlr)
CharmmTorsionParameter (OpenMD)
CharmmTorsionType (OpenMD)
CharScanner (antlr)
CharScannerLiteralsLess (antlr)
CharStreamException (antlr)
CharStreamIOException (antlr)
ChebyshevT (OpenMD)
ChebyshevU (OpenMD)
ci_char_traits (OpenMD::Utils)
CircularQueue (antlr)
cmdline_parser_params
COHZ (OpenMD)
CollectiveDipoleDisplacement (OpenMD)
CommonAST (antlr)
CommonASTWithHiddenTokens (antlr)
CommonHiddenStreamToken (antlr)
CommonToken (antlr)
Communicator (OpenMD)
Comparator (OpenMD)
Component (OpenMD)
CompositeConstraint (QuantLib)
CompositeShape (OpenMD)
CompositeVisitor (OpenMD)
COMVel (OpenMD)
ConjugateGradient (QuantLib)
Constraint (QuantLib)
ConstraintData (OpenMD)
ConstraintElem (OpenMD)
ConstraintPair (OpenMD)
ConstraintStamp (OpenMD)
ConstraintWriter (OpenMD)
ContactAngle1 (OpenMD)
ContactAngle2 (OpenMD)
ContainsConstraint (OpenMD)
ConvexHull (OpenMD)
CoordinationNumber (OpenMD)
CosineBendType (OpenMD)
CosineSeriesBendType (OpenMD)
CrossCorrFunc (OpenMD)
CubicBendType (OpenMD)
CubicBondType (OpenMD)
CubicLattice (OpenMD)
CubicSpline (OpenMD)
CubicTorsionType (OpenMD)
Cuboctahedron (OpenMD)
CurlingStoneDecahedron (OpenMD)
CurrentDensity (OpenMD)
CurrentDensityAutoCorrFunc (OpenMD)
CutoffGroup (OpenMD)
CutoffGroupStamp (OpenMD)
D
DataHolder (OpenMD)
DataStorage (OpenMD)
Decahedron (OpenMD)
DefaultAtomVisitor (OpenMD)
TokenStreamRewriteEngine::DeleteOp (antlr)
DensityField (OpenMD)
DensityHistogram (OpenMD)
DensityPlot (OpenMD)
DipoleCorrFunc (OpenMD)
DipoleField (OpenMD)
DipoleOrientation (OpenMD)
DirectionalAdapter (OpenMD)
DirectionalAtom (OpenMD)
DirectionalAtomTypesSectionParser (OpenMD)
DirectionalAtypeParameters (OpenMD)
DirectionalRCorrFunc (OpenMD)
Displacement (OpenMD)
DisplacementZ (OpenMD)
DistanceFinder (OpenMD)
DLM (OpenMD)
DumpReader (OpenMD)
DumpStatusFunction (OpenMD)
DumpWriter (OpenMD)
DynamicProperty (OpenMD)
DynamicRectMatrix (OpenMD)
DynamicVector (OpenMD)
E
EAM (OpenMD)
EAMAdapter (OpenMD)
EAMAtomData (OpenMD)
EAMAtomTypesSectionParser (OpenMD)
EAMInteractionData (OpenMD)
EAMInteractionType (OpenMD)
EAMParameters (OpenMD)
Eigenvalue (JAMA)
Electrostatic (OpenMD)
ElectrostaticAtomData (OpenMD)
ElectrostaticInteraction (OpenMD)
Element (OpenMD)
ElementsTable (OpenMD)
Ellipsoid (OpenMD)
EndCriteria (QuantLib)
EnergyCorrFunc (OpenMD)
EqualConstraint (OpenMD)
EqualIgnoreCaseConstraint (OpenMD)
Equipartition (OpenMD)
errorStruct
EvenConstraint (OpenMD)
TokenStreamRewriteEngine::executeOperation (antlr)
F
FCCLattice (OpenMD)
FCCOfR (OpenMD)
Field (OpenMD)
FilenameObserver
FixedBondType (OpenMD)
FixedChargeAdapter (OpenMD)
FixedChargeAtypeParameters (OpenMD)
FluctuatingAtypeParameters (OpenMD)
FluctuatingChargeAdapter (OpenMD)
FluctuatingChargeAtomData (OpenMD)
FluctuatingChargeAtomTypesSectionParser (OpenMD)
FluctuatingChargeConstraints (OpenMD)
FluctuatingChargeDamped (OpenMD)
FluctuatingChargeForces (OpenMD)
FluctuatingChargeLangevin (OpenMD)
FluctuatingChargeNVE (OpenMD)
FluctuatingChargeNVT (OpenMD)
FluctuatingChargeObjectiveFunction (OpenMD)
FluctuatingChargeParameters (OpenMD)
FluctuatingChargePropagator (OpenMD)
ForceAutoCorrFunc (OpenMD)
ForceDecomposition (OpenMD)
ForceField (OpenMD)
ForceFieldOptions (OpenMD)
ForceManager (OpenMD)
ForceMatrixDecomposition (OpenMD)
ForceModifier (OpenMD)
ForTorCorrFunc (OpenMD)
FragmentStamp (OpenMD)
FrameData (OpenMD)
FrameTimeCorrFunc (OpenMD)
FreqFlucCorrFunc (OpenMD)
FuncflParameters (OpenMD)
G
GaussianTriangleQuadratureRule (OpenMD)
GayBerneAdapter (OpenMD)
GayBerneAtomTypesSectionParser (OpenMD)
GB (OpenMD)
GBAtypeParameters (OpenMD)
GBheadVisitor (OpenMD)
GBInteractionData (OpenMD)
GBtailVisitor (OpenMD)
GCN (OpenMD)
GCNSeq (OpenMD)
GenericData (OpenMD)
GenericFactory (OpenMD)
gengetopt_args_info
GhostBend (OpenMD)
GhostTorsion (OpenMD)
Globals (OpenMD)
GofAngle2 (OpenMD)
GofR (OpenMD)
GofRAngle (OpenMD)
GofRAngle2 (OpenMD)
GofROmega (OpenMD)
GofRTheta (OpenMD)
GofRZ (OpenMD)
GofXyz (OpenMD)
GofZ (OpenMD)
GreaterThanConstraint (OpenMD)
GreaterThanOrEqualTo (OpenMD)
Grid3D (OpenMD)
Grid3d
gzstreambase (OpenMD)
gzstreambuf (OpenMD)
H
HarmonicBendType (OpenMD)
HarmonicBondType (OpenMD)
HarmonicInversionType (OpenMD)
HarmonicSineBendType (OpenMD)
HarmonicTorsionType (OpenMD)
Molecule::HBondDonor (OpenMD)
HBondGeometric (OpenMD)
HBondJump (OpenMD)
HBondJumpR (OpenMD)
HBondJumpZ (OpenMD)
HBondPersistence (OpenMD)
HBondR (OpenMD)
HBondRvol (OpenMD)
HBondZ (OpenMD)
HBondZvol (OpenMD)
Hull (OpenMD)
HullFinder (OpenMD)
Hxy (OpenMD)
HydrodynamicsElement (OpenMD)
HydrodynamicsModel (OpenMD)
HydrodynamicsModelBuilder (OpenMD)
HydrodynamicsModelCreator (OpenMD)
HydrodynamicsModelFactory (OpenMD)
HydrogenBondingInteraction (OpenMD)
HydroIO (OpenMD)
HydroProp (OpenMD)
I
IcosahedralOfR (OpenMD)
Icosahedron (OpenMD)
ifstrstream (OpenMD)
igzstream (OpenMD)
Constraint::Impl (QuantLib)
ImproperCosineInversionParameter (OpenMD)
ImproperCosineInversionType (OpenMD)
IndexFinder (OpenMD)
IndexListContainer (OpenMD)
InoDecahedron (OpenMD)
InputBuffer (antlr)
TokenStreamRewriteEngine::InsertBeforeOp (antlr)
Integrator (OpenMD)
IntegratorBuilder (OpenMD)
IntegratorCreator (OpenMD)
IntegratorFactory (OpenMD)
InteractionData (OpenMD)
InteractionManager (OpenMD)
InteractionTimeCorrFunc (OpenMD)
InversePowerSeries (OpenMD)
InversePowerSeriesInteractionData (OpenMD)
InversePowerSeriesInteractionType (OpenMD)
Inversion (OpenMD)
InversionData (OpenMD)
InversionDataSet (OpenMD)
InversionStamp (OpenMD)
InversionType (OpenMD)
InversionTypeParser (OpenMD)
InversionTypesSectionParser (OpenMD)
IOException (antlr)
is_container (OpenMD::Utils::details)
is_container< T, std::void_t< typename T::value_type, typename T::reference, typename T::const_reference, typename T::iterator, typename T::const_iterator, typename T::difference_type, typename T::size_type, decltype(std::declval< T >().begin()), decltype(std::declval< T >().end()), decltype(std::declval< T >().cbegin()), decltype(std::declval< T >().cend()), decltype(std::declval< T >().max_size()), decltype(std::declval< T >().empty())> > (OpenMD::Utils::details)
K
Kirkwood (OpenMD)
KirkwoodBuff (OpenMD)
KirkwoodQuadrupoles (OpenMD)
L
LangevinDynamics (OpenMD)
LangevinHullDynamics (OpenMD)
LangevinHullForceModifier (OpenMD)
LangevinPiston (OpenMD)
Lattice (OpenMD)
LatticeBuilder (OpenMD)
LatticeCreator (OpenMD)
LatticeFactory (OpenMD)
LDForceModifier (OpenMD)
LegendreCorrFunc (OpenMD)
LegendreCorrFuncZ (OpenMD)
LegendreGauss1d (OpenMD)
LegendreGauss1dParams (OpenMD)
LegendrePolynomial (OpenMD)
LennardJonesAdapter (OpenMD)
LennardJonesAtomTypesSectionParser (OpenMD)
LennardJonesInteractionType (OpenMD)
LessThanConstraint (OpenMD)
LessThanOrEqualToConstraint (OpenMD)
LessThanPeriodicityFunctor (OpenMD)
LexerInputState (antlr)
Light (OpenMD::Perturbations)
LightParameters (OpenMD::Perturbations)
LineSearch (QuantLib)
LineSearchBasedMethod (QuantLib)
LipidHeadVisitor (OpenMD)
LipidTransVisitor (OpenMD)
LJ (OpenMD)
LJAtypeParameters (OpenMD)
LJInteractionData (OpenMD)
LLkParser (antlr)
LocalIndexManager (OpenMD)
M
MagneticField (OpenMD)
MassDensityR (OpenMD)
MassDensityZ (OpenMD)
MatrixAccumulator (OpenMD)
MAW (OpenMD)
MAWInteractionData (OpenMD)
MAWInteractionType (OpenMD)
MDLexer
MDParser
MDTreeParser
MeanDisplacement (OpenMD)
Mesh (OpenMD)
MetallicInteraction (OpenMD)
MethodFactory (OpenMD::RNEMD)
Mie (OpenMD)
MieInteractionData (OpenMD)
MieInteractionType (OpenMD)
MinimizerParameters (OpenMD)
MismatchedCharException (antlr)
MismatchedTokenException (antlr)
MolecularRestraint (OpenMD)
Molecule (OpenMD)
MoleculeACF (OpenMD)
MoleculeCCF (OpenMD)
MoleculeCount (OpenMD)
MoleculeCreator (OpenMD)
MoleculeStamp (OpenMD)
MoLocator (OpenMD)
MomAngMomCorrFunc (OpenMD)
MomentData (OpenMD)
MomentumCorrFunc (OpenMD)
MomentumHistogram (OpenMD)
Morse (OpenMD)
MorseBondType (OpenMD)
MorseInteractionData (OpenMD)
MorseInteractionType (OpenMD)
MPFrameTimeCorrFunc (OpenMD)
MPITraits (OpenMD)
MPITraits< RectMatrix< T, R, C > > (OpenMD)
MPITraits< SquareMatrix3< T > > (OpenMD)
MPITraits< Vector3< T > > (OpenMD)
MPITraits< Vector< T, Dim > > (OpenMD)
MSMSFormat (OpenMD)
MultiComponentRDF (OpenMD)
MultipassCorrFunc (OpenMD)
MultipoleAdapter (OpenMD)
MultipoleAtomTypesSectionParser (OpenMD)
MultipoleAtypeParameters (OpenMD)
MultipoleSum (OpenMD)
N
NameFinder (OpenMD)
NanoLength (OpenMD)
NanoVolume (OpenMD)
NegativeConstraint (OpenMD)
NgammaT (OpenMD)
NitrileFrequencyMap (OpenMD)
NIVSMethod (OpenMD::RNEMD)
NoConstraint (QuantLib)
NodesStamp (OpenMD)
NonBondedInteraction (OpenMD)
NonBondedInteractionsSectionParser (OpenMD)
NonBondedInteractionType (OpenMD)
NonBondedInteractionTypeProperties (OpenMD)
NonNegativeConstraint (OpenMD)
NonPositiveConstraint (OpenMD)
NonZeroConstraint (OpenMD)
NoStatus (OpenMD)
NotEmptyConstraint (OpenMD)
NotParamConstraint (OpenMD)
NoViableAltException (antlr)
NoViableAltForCharException (antlr)
NPA (OpenMD)
NPAT (OpenMD)
NPrT (OpenMD)
NPT (OpenMD)
NPTf (OpenMD)
NPTi (OpenMD)
NPTsz (OpenMD)
NPTxyz (OpenMD)
NumberR (OpenMD)
NumberZ (OpenMD)
NVE (OpenMD)
NVT (OpenMD)
O
ObjectACF (OpenMD)
ObjectCCF (OpenMD)
ObjectCount (OpenMD)
ObjectiveFunction (QuantLib)
ObjectRestraint (OpenMD)
ogzstream (OpenMD)
OnsagerCorrFunc (OpenMD)
OpenMDBitSet (OpenMD)
OpenMDException (OpenMD)
OplsTorsionType (OpenMD)
OptimizationBuilder (OpenMD)
OptimizationCreator (OpenMD)
OptimizationFactory (OpenMD)
OptimizationMethod (QuantLib)
OptionSectionParser (OpenMD)
OrderParameterProbZ (OpenMD)
OrParamConstraint (OpenMD)
StaticAnalyser::OutputData (OpenMD)
P
P2OrderParameter (OpenMD)
P2R (OpenMD)
P2Z (OpenMD)
PairList (OpenMD)
pAngle (OpenMD)
ParamConstraintFacade (OpenMD)
Parameter
ParameterBase
ParametersTransformation (QuantLib)
ParameterTraits
ParameterTraits< bool >
ParameterTraits< int >
ParameterTraits< RealType >
ParameterTraits< std::pair< int, int > >
ParameterTraits< std::string >
ParameterTraits< std::vector< RealType > >
ParameterTraits< unsigned long int >
Parser (antlr)
ParserInputState (antlr)
ParticleTimeCorrFunc (OpenMD)
PipeDensity (OpenMD)
Plan (OpenMD)
PolarizableAdapter (OpenMD)
PolarizableAtomTypesSectionParser (OpenMD)
PolarizableAtypeParameters (OpenMD)
Polynomial (OpenMD)
PolynomialBendType (OpenMD)
PolynomialBondType (OpenMD)
PolynomialInversionType (OpenMD)
PolynomialTorsionType (OpenMD)
PositionZ (OpenMD)
PositiveConstraint (OpenMD)
PositiveConstraint (QuantLib)
PotDiff (OpenMD)
PotentialEnergyObjectiveFunction (OpenMD)
PotVecAccumulator (OpenMD)
PrepareVisitor (OpenMD)
Problem (QuantLib)
ProgressBar (OpenMD)
PropertyMap (OpenMD)
Q
QR (JAMA)
QuarticBendType (OpenMD)
QuarticBondType (OpenMD)
QuarticTorsionType (OpenMD)
Quaternion (OpenMD)
R
RadialDistrFunc (OpenMD)
RandNumGen (OpenMD::Utils)
Rattle (OpenMD)
RBCOMVisitor (OpenMD)
RCorrFunc (OpenMD)
RCorrFuncR (OpenMD)
RCorrFuncZ (OpenMD)
RealSphericalHarmonic (OpenMD)
RealSymmetricTridiagonal (OpenMD)
RecognitionException (antlr)
RectMatrix (OpenMD)
RefCount (antlr)
RegularCuboctahedron (OpenMD)
RegularDecahedron (OpenMD)
ReplacementVisitor (OpenMD)
TokenStreamRewriteEngine::ReplaceOp (antlr)
ReplicateVisitor (OpenMD)
RepulsivePower (OpenMD)
RepulsivePowerInteractionType (OpenMD)
Restraint (OpenMD)
RestraintForceModifier (OpenMD)
RestraintStamp (OpenMD)
RestReader (OpenMD)
RestWriter (OpenMD)
Revision (OpenMD)
TokenStreamRewriteEngine::RewriteOperation (antlr)
RhoR (OpenMD)
RhoZ (OpenMD)
RigidBody (OpenMD)
RigidBodyStamp (OpenMD)
RippleOP (OpenMD)
RMSD (OpenMD)
RNEMD (OpenMD::RNEMD)
RNEMDParameters (OpenMD::RNEMD)
RNEMDR (OpenMD)
RNEMDRTheta (OpenMD)
RNEMDZ (OpenMD)
RotAngleDisplacement (OpenMD)
RotationAlgorithm (OpenMD)
RoughShell (OpenMD)
RPInteractionData (OpenMD)
S
SameSectionParserFunctor (OpenMD)
SC (OpenMD)
SCAtomData (OpenMD)
SCAtomTypesSectionParser (OpenMD)
SCAtypeParameters (OpenMD)
SCDElem (OpenMD)
SCDOrderParameter (OpenMD)
SCInteractionData (OpenMD)
SCLattice (OpenMD)
SCN (OpenMD)
SDKBend (OpenMD)
SDKBendType (OpenMD)
SDShape (OpenMD)
SectionParser (OpenMD)
SectionParserContext (OpenMD)
SectionParserManager (OpenMD)
SelectionCompiler (OpenMD)
SelectionCorrFunc (OpenMD)
SelectionEvaluator (OpenMD)
SelectionManager (OpenMD)
SelectionSet (OpenMD)
SelfData (OpenMD)
SemanticException (antlr)
SequentialAnalyzer (OpenMD)
Shake (OpenMD)
Shape (OpenMD)
ShapeAtomType (OpenMD)
ShapeAtomTypesSectionParser (OpenMD)
ShapeBuilder (OpenMD)
shapedLattice (OpenMD)
shapedLatticeEllipsoid (OpenMD)
shapedLatticePentRod (OpenMD)
shapedLatticeRod (OpenMD)
shapedLatticeSpherical (OpenMD)
SHAPES (OpenMD)
ShellStatistics (OpenMD)
ShiftedMieBondType (OpenMD)
ShortRangeInteraction (OpenMD)
SimCreator (OpenMD)
SimInfo (OpenMD)
SimplePreprocessor (OpenMD)
SimplePreprocessor
SimpleTypeData (OpenMD)
SimSnapshotManager (OpenMD)
SlabStatistics (OpenMD)
Snapshot (OpenMD)
SnapshotManager (OpenMD)
SpatialStatistics (OpenMD)
SPFData (OpenMD)
SPFDynamics (OpenMD)
SPFForceManager (OpenMD::RNEMD)
SPFMethod (OpenMD::RNEMD)
Sphere (OpenMD)
SphericalHarmonic (OpenMD)
SquareMatrix (OpenMD)
SquareMatrix3 (OpenMD)
SSDAtomVisitor (OpenMD)
StaticAnalyser (OpenMD)
Stats (OpenMD)
Stats::StatsData (OpenMD)
StatusFunction (OpenMD)
StatWriter (OpenMD)
SteepestDescent (QuantLib)
Sticky (OpenMD)
StickyAdapter (OpenMD)
StickyAtomTypesSectionParser (OpenMD)
StickyAtypeParameters (OpenMD)
StickyInteractionData (OpenMD)
StickyPowerAtomTypesSectionParser (OpenMD)
STLContainerTypeData
StrangFixCowperTriangleQuadratureRule (OpenMD)
StressCorrFunc (OpenMD)
StringTokenizer (OpenMD)
StuntDouble (OpenMD)
SurfaceDiffusion (OpenMD)
SuttonChenAdapter (OpenMD)
SVD (JAMA)
SwapMethod (OpenMD::RNEMD)
SwitchingFunction (OpenMD)
SystemACF (OpenMD)
SystemCCF (OpenMD)
SystemDecomposition (OpenMD)
SystemDipoleCorrFunc (OpenMD)
T
TetrahedralityHBMatrix (OpenMD)
TetrahedralityParam (OpenMD)
TetrahedralityParamDens (OpenMD)
TetrahedralityParamR (OpenMD)
TetrahedralityParamXYZ (OpenMD)
TetrahedralityParamZ (OpenMD)
Thermo (OpenMD)
ThermoIntegrationForceModifier (OpenMD)
ThetaCorrFunc (OpenMD)
TimeCorrFunc (OpenMD)
Token (antlr)
Token (OpenMD)
TokenBuffer (antlr)
TokenMap (OpenMD)
TokenRef (antlr)
TokenRefCount (antlr)
TokenStream (antlr)
TokenStreamBasicFilter (antlr)
TokenStreamException (antlr)
TokenStreamHiddenTokenFilter (antlr)
TokenStreamIOException (antlr)
TokenStreamRecognitionException (antlr)
TokenStreamRetryException (antlr)
TokenStreamRewriteEngine (antlr)
TokenStreamSelector (antlr)
TokenStreamRewriteEngine::tokenToStream (antlr)
TokenWithIndex (antlr)
TorForCorrFunc (OpenMD)
TorqueAutoCorrFunc (OpenMD)
Torsion (OpenMD)
TorsionData (OpenMD)
TorsionDataSet (OpenMD)
TorsionStamp (OpenMD)
TorsionType (OpenMD)
TorsionTypeParser (OpenMD)
TorsionTypesSectionParser (OpenMD)
CharScanner::Tracer (antlr)
Parser::Tracer (antlr)
TreeParser::Tracer (antlr)
TranslationalOrderParamZ (OpenMD)
TrappeTorsionType (OpenMD)
TreeNode (OpenMD)
TreeParser (antlr)
TreeParserInputState (antlr)
Triangle (OpenMD)
TriangleQuadrature (OpenMD)
TriangleQuadratureRule (OpenMD)
TruncatedCube (OpenMD)
TwoDGofR (OpenMD)
TypeContainer (OpenMD)
U
UFFAdapter (OpenMD)
UFFAtomTypesSectionParser (OpenMD)
UFFAtypeParameters (OpenMD)
UniformField (OpenMD)
UniformGradient (OpenMD)
UreyBradleyBend (OpenMD)
UreyBradleyBendType (OpenMD)
V
VanDerWaalsInteraction (OpenMD)
VCorrFunc (OpenMD)
VCorrFuncR (OpenMD)
VCorrFuncZ (OpenMD)
Vector (OpenMD)
Vector2 (OpenMD)
Vector3 (OpenMD)
VectorAccumulator (OpenMD)
VectorTypeData (OpenMD)
VelAngularVelOutProdCorrFunc (OpenMD)
Velocitizer (OpenMD)
VelocityAutoOutProductCorrFunc (OpenMD)
VelocityField (OpenMD)
VelocityVerletIntegrator (OpenMD)
VelocityZ (OpenMD)
VSSMethod (OpenMD::RNEMD)
W
WaterTypeVisitor (OpenMD)
WCorrFunc (OpenMD)
Wildcard
WrappingVisitor (OpenMD)
X
XYZAtom (OpenMD)
XYZFormat (OpenMD)
XYZVisitor (OpenMD)
Z
ZconsData (OpenMD)
ZConsReader (OpenMD)
ZConsStamp (OpenMD)
ZConstraintForceModifier (OpenMD)
ZconstraintMol (OpenMD)
ZconstraintParam (OpenMD)
ZConsVisitor (OpenMD)
ZConsWriter (OpenMD)
ZeroConstraint (OpenMD)
ZhouParameters (OpenMD)