| Cantlr4::tree::AbstractParseTreeVisitor | |
| COMDVisitor | This class defines an abstract visitor for a parse tree produced by OMDParser |
| COMDBaseVisitor | This class provides an empty implementation of OMDVisitor, which can be extended to create a visitor which only needs to handle a subset of the available methods |
| COMDTreeVisitor | |
| COpenMD::Utils::Accumulator< T > | |
| COpenMD::Utils::Accumulator< Mat3x3d > | |
| COpenMD::Utils::AccumulatorView< Mat3x3dAccumulator > | |
| COpenMD::Utils::Accumulator< RealType > | |
| COpenMD::Utils::AccumulatorView< RealAccumulator > | |
| COpenMD::Utils::Accumulator< std::vector< RealType > > | |
| COpenMD::Utils::AccumulatorView< StdVectorAccumulator > | |
| COpenMD::Utils::Accumulator< Vector< RealType, 3 > > | |
| COpenMD::Utils::AccumulatorView< Vector3dAccumulator > | |
| COpenMD::Utils::Accumulator< Vector< RealType, Dim > > | |
| COpenMD::Utils::Accumulator< Vector< RealType, N_INTERACTION_FAMILIES > > | |
| COpenMD::Utils::AccumulatorView< PotVecAccumulator > | |
| COpenMD::Utils::AccumulatorView< T > | |
| COpenMD::AtomInfo | |
| COpenMD::AtomType | AtomType is what OpenMD looks to for unchanging data about an atom |
| COpenMD::AtomTypeCompare | |
| COpenMD::BaseAccumulator | |
| COpenMD::Accumulator | Basic Accumulator class for numbers |
| COpenMD::MatrixAccumulator | |
| COpenMD::PotVecAccumulator | |
| COpenMD::VectorAccumulator | |
| COpenMD::Utils::BaseAccumulator | |
| COpenMD::Utils::AccumulatorView< Mat3x3dAccumulator > | |
| COpenMD::Utils::AccumulatorView< PotVecAccumulator > | |
| COpenMD::Utils::AccumulatorView< RealAccumulator > | |
| COpenMD::Utils::AccumulatorView< StdVectorAccumulator > | |
| COpenMD::Utils::AccumulatorView< Vector3dAccumulator > | |
| COpenMD::BaseVisitor | |
| COpenMD::AtomNameVisitor | |
| COpenMD::BaseAtomVisitor | |
| COpenMD::DefaultAtomVisitor | |
| COpenMD::ReplacementVisitor | Replaces an atomic object with a collection atomic sites |
| COpenMD::GBheadVisitor | |
| COpenMD::GBtailVisitor | |
| COpenMD::SSDAtomVisitor | |
| COpenMD::BaseRigidBodyVisitor | |
| COpenMD::LipidHeadVisitor | |
| COpenMD::RBCOMVisitor | |
| COpenMD::CompositeVisitor | |
| COpenMD::LipidTransVisitor | |
| COpenMD::PrepareVisitor | |
| COpenMD::ReplicateVisitor | |
| COpenMD::WaterTypeVisitor | |
| COpenMD::WrappingVisitor | |
| COpenMD::XYZVisitor | |
| COpenMD::ZConsVisitor | |
| Cstd::basic_streambuf | |
| COpenMD::basic_teebuf< char > | |
| COpenMD::basic_teebuf< CharT, Traits > | As a subclass of basic_streambuf, basic_teebuf can operate on multiple stream simultaneously |
| COpenMD::BendData | |
| COpenMD::BendDataSet | |
| COpenMD::BendType | |
| COpenMD::CosineBendType | A simple harmonic bend using the cosine of the angle instead of the angle itself: |
| COpenMD::CosineSeriesBendType | A bend used primarily in UFF that utilizes a Fourier series in terms of the cosine of the bend angle: |
| COpenMD::CubicBendType | |
| COpenMD::HarmonicBendType | |
| COpenMD::SDKBendType | |
| COpenMD::UreyBradleyBendType | |
| COpenMD::HarmonicSineBendType | A bend using the square of the sine of the angle instead of the angle itself: |
| COpenMD::PolynomialBendType | "types/PolynomialBendType.hpp" |
| COpenMD::QuarticBendType | |
| COpenMD::BendTypeParser | |
| COpenMD::BondType | BondType class is responsible for calculating the force and energy of the bond |
| COpenMD::CubicBondType | |
| COpenMD::FixedBondType | FixedBondType class is responsible for calculating the force and energy of the bond |
| COpenMD::HarmonicBondType | HarmonicBondType is the basic OpenMD bond type |
| COpenMD::MorseBondType | MorseBondType is a more realistic bond potential |
| COpenMD::PolynomialBondType | "types/PolynomialBondType.hpp" |
| COpenMD::QuarticBondType | |
| COpenMD::ShiftedMieBondType | ShiftedMieBondType is used to correct 1-3 bend interactions in the SDK force field |
| COpenMD::BondTypeParser | |
| COpenMD::BuckinghamInteractionData | |
| Cstd::char_traits | |
| COpenMD::Utils::ci_char_traits | |
| COpenMD::CharmmTorsionParameter | |
| COpenMD::ChebyshevT | A collection of Chebyshev Polynomials |
| COpenMD::ChebyshevU | A collection of Chebyshev Polynomials |
| Ccmdline_parser_params | The additional parameters to pass to parser functions |
| COpenMD::Communicator< D > | |
| CQuantLib::Constraint | Base constraint class |
| CQuantLib::BoundaryConstraint | Constraint imposing all arguments to be in [low,high] |
| CQuantLib::CompositeConstraint | Constraint enforcing both given sub-constraints |
| CQuantLib::NoConstraint | No constraint |
| CQuantLib::PositiveConstraint | Constraint imposing positivity to all arguments |
| COpenMD::ConstraintData | |
| COpenMD::ConstraintElem | An adapter class of StuntDouble which is used at constraint algorithm |
| COpenMD::ConstraintPair | |
| COpenMD::ConstraintWriter | |
| COpenMD::CubicSpline | |
| COpenMD::Cuboctahedron | Generates coordinates of atoms inside a Cuboctahedron |
| COpenMD::RegularCuboctahedron | |
| COpenMD::TruncatedCube | |
| COpenMD::CutoffGroup | |
| COpenMD::DataHolder | |
| COpenMD::AtomStamp | |
| COpenMD::BendStamp | |
| COpenMD::BondStamp | |
| COpenMD::Component | |
| COpenMD::ConstraintStamp | |
| COpenMD::CutoffGroupStamp | |
| COpenMD::FluctuatingChargeParameters | |
| COpenMD::ForceFieldOptions | |
| COpenMD::FragmentStamp | |
| COpenMD::Globals | |
| COpenMD::InversionStamp | |
| COpenMD::MinimizerParameters | |
| COpenMD::MoleculeStamp | |
| COpenMD::NodesStamp | |
| COpenMD::Perturbations::LightParameters | |
| COpenMD::Perturbations::VelocityFieldParameters | Parsed contents of the velocityField{ ... } block |
| COpenMD::RNEMD::RNEMDParameters | |
| COpenMD::RestraintStamp | |
| COpenMD::RigidBodyStamp | |
| COpenMD::TorsionStamp | |
| COpenMD::ZConsStamp | |
| COpenMD::DataStorage | |
| COpenMD::Decahedron | Creates the regular decahedron, Ino decahedron, or truncated (Marks) decahedron structures (depending on the parameters) |
| COpenMD::CurlingStoneDecahedron | |
| COpenMD::InoDecahedron | |
| COpenMD::RegularDecahedron | |
| COpenMD::DirectionalAdapter | |
| COpenMD::DirectionalAtypeParameters | |
| COpenMD::DistanceFinder | |
| COpenMD::DumpReader | |
| COpenMD::DumpWriter | |
| COpenMD::DynamicProperty | "applications/dynamicProps/DynamicProperty" |
| COpenMD::TimeCorrFunc< Mat3x3d > | |
| COpenMD::AutoCorrFunc< Mat3x3d > | |
| COpenMD::ObjectACF< Mat3x3d > | |
| COpenMD::AngularVelocityAutoOutProductCorrFunc | |
| COpenMD::ForceAutoCorrFunc | |
| COpenMD::TorqueAutoCorrFunc | |
| COpenMD::VelocityAutoOutProductCorrFunc | |
| COpenMD::ObjectACF< Mat3x3d > | |
| COpenMD::SystemACF< Mat3x3d > | |
| COpenMD::ActionCorrFunc | |
| COpenMD::StressCorrFunc | |
| COpenMD::SystemACF< Mat3x3d > | |
| COpenMD::AutoCorrFunc< Mat3x3d > | |
| COpenMD::CrossCorrFunc< Mat3x3d > | |
| COpenMD::ObjectCCF< Mat3x3d > | |
| COpenMD::AngularVelVelOutProdCorrFunc | |
| COpenMD::ForTorCorrFunc | |
| COpenMD::TorForCorrFunc | |
| COpenMD::VelAngularVelOutProdCorrFunc | |
| COpenMD::ObjectCCF< Mat3x3d > | |
| COpenMD::CrossCorrFunc< Mat3x3d > | |
| COpenMD::TimeCorrFunc< RealType > | |
| COpenMD::AutoCorrFunc< RealType > | |
| COpenMD::ObjectACF< RealType > | |
| COpenMD::DipoleCorrFunc | |
| COpenMD::FreqFlucCorrFunc | Frequency Fluctuation Correlation Function |
| COpenMD::RCorrFunc | |
| COpenMD::RCorrFuncR | |
| COpenMD::RCorrFuncZ | |
| COpenMD::ThetaCorrFunc | |
| COpenMD::VCorrFunc | |
| COpenMD::VCorrFuncR | |
| COpenMD::VCorrFuncZ | |
| COpenMD::WCorrFunc | |
| COpenMD::ObjectACF< RealType > | |
| COpenMD::SystemACF< RealType > | |
| COpenMD::CurrentDensityAutoCorrFunc | |
| COpenMD::SFG | Computes the vibrational SFG susceptibility spectrum Im χ²(ω) in the OH-stretch region using the exciton Hamiltonian approach with an ADIABATIC quantum propagator |
| COpenMD::SystemDipoleCorrFunc | |
| COpenMD::SystemACF< RealType > | |
| COpenMD::BondCorrFunc | |
| COpenMD::AutoCorrFunc< RealType > | |
| COpenMD::CrossCorrFunc< RealType > | |
| COpenMD::ObjectCCF< RealType > | |
| COpenMD::ChargeKineticCorrFunc | |
| COpenMD::ChargeOrientationCorrFunc | |
| COpenMD::MomAngMomCorrFunc | |
| COpenMD::ObjectCCF< RealType > | |
| COpenMD::CrossCorrFunc< RealType > | |
| COpenMD::HBondJump | |
| COpenMD::HBondJumpR | |
| COpenMD::HBondJumpZ | |
| COpenMD::HBondPersistence | |
| COpenMD::TimeCorrFunc< Vector< RealType, 4 > > | |
| COpenMD::AutoCorrFunc< Vector< RealType, 4 > > | |
| COpenMD::MoleculeACF< Vector< RealType, 4 > > | |
| COpenMD::COHZ | |
| COpenMD::MoleculeACF< Vector< RealType, 4 > > | |
| COpenMD::AutoCorrFunc< Vector< RealType, 4 > > | |
| COpenMD::TimeCorrFunc< Vector3d > | |
| COpenMD::AutoCorrFunc< Vector3d > | |
| COpenMD::MoleculeACF< Vector3d > | |
| COpenMD::RotAngleDisplacement | |
| COpenMD::MoleculeACF< Vector3d > | |
| COpenMD::ObjectACF< Vector3d > | |
| COpenMD::DirectionalRCorrFunc | |
| COpenMD::Displacement | |
| COpenMD::DisplacementZ | |
| COpenMD::LegendreCorrFunc | |
| COpenMD::LegendreCorrFuncZ | |
| COpenMD::MeanDisplacement | |
| COpenMD::ObjectACF< Vector3d > | |
| COpenMD::SystemACF< Vector3d > | |
| COpenMD::CollectiveDipoleDisplacement | Calculates the collective dipole displacement function |
| COpenMD::SystemACF< Vector3d > | |
| COpenMD::AutoCorrFunc< Vector3d > | |
| COpenMD::CrossCorrFunc< Vector3d > | |
| COpenMD::SystemCCF< Vector3d > | |
| COpenMD::OnsagerCorrFunc | |
| COpenMD::SystemCCF< Vector3d > | |
| COpenMD::CrossCorrFunc< Vector3d > | |
| COpenMD::TimeCorrFunc< int > | |
| COpenMD::CrossCorrFunc< int > | |
| COpenMD::ObjectCCF< int > | |
| COpenMD::SelectionCorrFunc | |
| COpenMD::ObjectCCF< int > | |
| COpenMD::CrossCorrFunc< int > | |
| COpenMD::TimeCorrFunc< Mat3x3d > | |
| COpenMD::TimeCorrFunc< RealType > | |
| COpenMD::TimeCorrFunc< Vector< RealType, 4 > > | |
| COpenMD::TimeCorrFunc< Vector3d > | |
| COpenMD::TimeCorrFunc< int > | |
| COpenMD::TimeCorrFunc< T > | Computes a correlation function by scanning a trajectory once to precompute quantities to be correlated |
| COpenMD::AutoCorrFunc< T > | |
| COpenMD::MoleculeACF< T > | |
| COpenMD::MoleculeACF< T > | |
| COpenMD::ObjectACF< T > | |
| COpenMD::ObjectACF< T > | |
| COpenMD::SystemACF< T > | |
| COpenMD::SystemACF< T > | |
| COpenMD::AutoCorrFunc< T > | |
| COpenMD::CrossCorrFunc< T > | |
| COpenMD::MoleculeCCF< T > | |
| COpenMD::MoleculeCCF< T > | |
| COpenMD::ObjectCCF< T > | |
| COpenMD::ObjectCCF< T > | |
| COpenMD::SystemCCF< T > | |
| COpenMD::SystemCCF< T > | |
| COpenMD::CrossCorrFunc< T > | |
| COpenMD::TimeCorrFunc< T > | Computes a correlation function by scanning a trajectory once to precompute quantities to be correlated |
| CDynamicRectMatrix< Real > | Rectangular matrix class with contiguous flat storage |
| COpenMD::DynamicRectMatrix< Real > | Rectangular matrix class with contiguous flat storage |
| CDynamicVector< Real, Alloc > | Dynamically-sized vector class |
| COpenMD::DynamicVector< Real, Alloc > | Dynamically-sized vector class |
| COpenMD::EAMAdapter | |
| COpenMD::EAMAtomData | |
| COpenMD::EAMInteractionData | |
| COpenMD::EAMParameters | |
| CJAMA::Eigenvalue< Real > | Computes eigenvalues and eigenvectors of a real (non-complex) matrix |
| COpenMD::ElectrostaticAtomData | |
| COpenMD::Element | |
| COpenMD::ElementsTable | Periodic Table of the Elements Using element data is a place holder when we lack information about a specific atom type |
| CQuantLib::EndCriteria | Criteria to end optimization process: |
| CerrorStruct | |
| Cstd::exception | STL class |
| COpenMD::OpenMDException | |
| Cstd::false_type | |
| COpenMD::Utils::details::is_container< T, std::void_t< typename T::value_type, typename T::reference, typename T::const_reference, typename T::iterator, typename T::const_iterator, typename T::difference_type, typename T::size_type, decltype(std::declval< T >().begin()), decltype(std::declval< T >().end()), decltype(std::declval< T >().cbegin()), decltype(std::declval< T >().cend()), decltype(std::declval< T >().max_size()), decltype(std::declval< T >().empty())> > | |
| COpenMD::Utils::details::is_container< typename, typename > | |
| CFilenameObserver | |
| COpenMD::FixedChargeAdapter | |
| COpenMD::FixedChargeAtypeParameters | |
| COpenMD::FluctuatingAtypeParameters | |
| COpenMD::FluctuatingChargeAdapter | |
| COpenMD::FluctuatingChargeAtomData | |
| COpenMD::FluctuatingChargeConstraints | |
| COpenMD::FluctuatingChargeForces | |
| COpenMD::FluctuatingChargePropagator | Abstract class for propagating fluctuating charge variables |
| COpenMD::FluctuatingChargeDamped | |
| COpenMD::FluctuatingChargeLangevin | |
| COpenMD::FluctuatingChargeNVE | |
| COpenMD::FluctuatingChargeNVT | |
| COpenMD::ForceDecomposition | ForceDecomposition is an interface for passing out and collecting information from many processors at various stages of the main non-bonded ForceLoop |
| COpenMD::ForceMatrixDecomposition | |
| COpenMD::ForceField | |
| COpenMD::ForceManager | ForceManager is responsible for calculating both the short range (bonded) interactions and long range (non-bonded) interactions |
| COpenMD::RNEMD::SPFForceManager | |
| COpenMD::ForceModifier | Abstract class for external ForceModifier classes |
| COpenMD::LDForceModifier | Force modifier for Langevin Dynamics applying friction and random forces as well as torques |
| COpenMD::LHDForceModifier | |
| COpenMD::LangevinHullForceModifier | Force modifier for NPT Langevin Hull Dynamics applying friction and random forces as well as torques |
| COpenMD::MagneticField | Applies a uniform (vector) magnetic field to the system |
| COpenMD::Perturbations::Light | Applies an EM field representing light to the system |
| COpenMD::RestraintForceModifier | |
| COpenMD::ThermoIntegrationForceModifier | |
| COpenMD::UniformField | Applies a uniform (vector) electric field to the system |
| COpenMD::UniformGradient | Applies a uniform electric field gradient to the system |
| COpenMD::ZConstraintForceModifier | |
| COpenMD::FrameData | FrameData is a structure for holding system-wide dynamic data about the simulation |
| COpenMD::FuncflParameters | |
| COpenMD::GayBerneAdapter | |
| COpenMD::GBAtypeParameters | |
| COpenMD::GBInteractionData | |
| COpenMD::GenericData | @ class GenericData GenericData.hpp "utils/GenericData.hpp" |
| COpenMD::SimpleTypeData< Restraint * > | |
| COpenMD::SimpleTypeData< DirectionalAtypeParameters > | |
| COpenMD::SimpleTypeData< EAMParameters > | |
| COpenMD::SimpleTypeData< FuncflParameters > | |
| COpenMD::SimpleTypeData< ZhouParameters > | |
| COpenMD::SimpleTypeData< FixedChargeAtypeParameters > | |
| COpenMD::SimpleTypeData< FluctuatingAtypeParameters > | |
| COpenMD::SimpleTypeData< GBAtypeParameters > | |
| COpenMD::SimpleTypeData< LJAtypeParameters > | |
| COpenMD::SimpleTypeData< MultipoleAtypeParameters > | |
| COpenMD::SimpleTypeData< PolarizableAtypeParameters > | |
| COpenMD::SimpleTypeData< ShapeAtomType * > | |
| COpenMD::SimpleTypeData< StickyAtypeParameters > | |
| COpenMD::SimpleTypeData< SCAtypeParameters > | |
| COpenMD::SimpleTypeData< UFFAtypeParameters > | |
| COpenMD::SimpleTypeData< bool > | |
| COpenMD::SimpleTypeData< int > | |
| COpenMD::SimpleTypeData< float > | |
| COpenMD::SimpleTypeData< RealType > | |
| COpenMD::SimpleTypeData< std::string > | |
| COpenMD::VectorTypeData< int > | |
| COpenMD::VectorTypeData< float > | |
| COpenMD::VectorTypeData< RealType > | |
| COpenMD::VectorTypeData< std::string > | |
| COpenMD::AtomData | |
| COpenMD::SimpleTypeData< ElemDataType > | SimpleTypeData class is a POD repository class |
| COpenMD::VectorTypeData< ElemDataType > | |
| COpenMD::GenericFactory< Object, IdentType, Creator > | GenericFactory is a template based Object Factory Factory pattern is used to define an interface for creating an object |
| Cgengetopt_args_info | Where the command line options are stored |
| COpenMD::Grid3D< Elem > | |
| CGrid3d | A generic 3d grid class |
| COpenMD::Molecule::HBondDonor | |
| COpenMD::Hull | |
| COpenMD::AlphaHull | Compute alpha complex or alpha shape |
| COpenMD::ConvexHull | |
| COpenMD::HullFinder | |
| COpenMD::AlphaHullFinder | |
| COpenMD::HydrodynamicsElement | |
| COpenMD::HydrodynamicsModel | |
| COpenMD::AnalyticalModel | |
| COpenMD::ApproximateModel | |
| COpenMD::BeadModel | References: |
| COpenMD::AtomicBeadModel | |
| COpenMD::RoughShell | |
| COpenMD::BoundaryElementModel | |
| COpenMD::HydrodynamicsModelCreator | |
| COpenMD::HydrodynamicsModelBuilder< ConcreteHydrodynamicsModel > | |
| COpenMD::HydrodynamicsModelFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an HydrodynamicsModel |
| COpenMD::HydroIO | |
| COpenMD::HydroProp | Container for information about the hydrodynamic behavior of objects interacting with surroundings |
| COpenMD::Icosahedron | Create the Mackay icosahedron structure |
| CQuantLib::Constraint::Impl | Base class for constraint implementations |
| COpenMD::ImproperCosineInversionParameter | |
| COpenMD::IndexFinder | |
| COpenMD::IndexListContainer | |
| COpenMD::Integrator | Declaration of the Integrator base class, which all other integrators inherit from |
| COpenMD::VelocityVerletIntegrator | |
| COpenMD::LangevinDynamics | |
| COpenMD::NPT | |
| COpenMD::LangevinPiston | Constant pressure and temperature integrator |
| COpenMD::NPA | Constant normal pressure and lateral surface area integrator No thermostat! |
| COpenMD::NPAT | Constant normal pressure and lateral surface area integrator |
| COpenMD::NPTf | |
| COpenMD::NPTsz | A utility integrator (much like NPTxyz) but which keeps the relative scaling of x & y fixed |
| COpenMD::NPTxyz | |
| COpenMD::NPTi | |
| COpenMD::NPrT | Constant normal pressure and lateral surface tension integrator |
| COpenMD::NgammaT | Constant lateral surface tension integrator |
| COpenMD::NVE | |
| COpenMD::NVT | Basic thermostating via Hoover, Phys.Rev.A, 1985, Vol |
| COpenMD::IntegratorCreator | |
| COpenMD::IntegratorBuilder< ConcreteIntegrator > | |
| COpenMD::IntegratorFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an Integrator |
| COpenMD::InteractionData | The InteractionData struct |
| COpenMD::InteractionManager | InteractionManager is responsible for keeping track of the non-bonded interactions (C++) |
| COpenMD::InversePowerSeriesInteractionData | |
| COpenMD::InversionData | |
| COpenMD::InversionDataSet | |
| COpenMD::InversionType | |
| COpenMD::HarmonicInversionType | This inversion potential has the form: |
| COpenMD::PolynomialInversionType | "types/PolynomialInversionType.hpp" |
| COpenMD::AmberImproperTorsionType | "types/AmberImproperTorsionType.hpp" |
| COpenMD::ImproperCosineInversionType | "types/ImproperCosineInversionType.hpp" |
| COpenMD::InversionTypeParser | "types/InversionTypeParser.hpp" |
| Cstd::ios_base | STL class |
| Cstd::basic_ios< Char > | STL class |
| Cstd::basic_istream< Char > | STL class |
| COpenMD::ifstrstream | Ifstrstream class provides a stream interface to read data from files |
| Cstd::istream | STL class |
| COpenMD::igzstream | |
| Cstd::basic_ostream< Char > | STL class |
| Cstd::ostream | STL class |
| COpenMD::ogzstream | |
| Cstd::ios | STL class |
| COpenMD::gzstreambase | |
| COpenMD::igzstream | |
| COpenMD::ogzstream | |
| COpenMD::Lattice | |
| COpenMD::CubicLattice | |
| COpenMD::BCCLattice | |
| COpenMD::FCCLattice | |
| COpenMD::SCLattice | |
| COpenMD::LatticeCreator | |
| COpenMD::LatticeBuilder< ConcreteLattice > | |
| COpenMD::LatticeFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an Lattice |
| COpenMD::LegendreGauss1d< returnType, argumentType > | |
| COpenMD::LegendreGauss1d< RealType, RealType > | |
| COpenMD::LegendreGauss1dParams | |
| COpenMD::LegendrePolynomial | A collection of Legendre Polynomials |
| COpenMD::LennardJonesAdapter | |
| COpenMD::LessThanPeriodicityFunctor | |
| Cantlr4::Lexer | |
| COMDLexer | |
| CQuantLib::LineSearch | Base class for line search |
| CQuantLib::ArmijoLineSearch | Armijo line search |
| COpenMD::LJAtypeParameters | |
| COpenMD::LJInteractionData | |
| COpenMD::LocalIndexManager | "utils/LocalIndexManager.hpp" |
| COpenMD::MAWInteractionData | |
| COpenMD::RNEMD::MethodFactory | |
| COpenMD::MieInteractionData | |
| COpenMD::Molecule | |
| COpenMD::MoleculeCreator | |
| COpenMD::MoleculeStampCompare | |
| COpenMD::MoLocator | |
| COpenMD::MomentData | |
| COpenMD::MorseInteractionData | |
| COpenMD::MPITraits< T > | |
| COpenMD::MPITraits< RectMatrix< T, R, C > > | |
| COpenMD::MPITraits< SquareMatrix3< T > > | |
| COpenMD::MPITraits< Vector3< T > > | |
| COpenMD::MPITraits< Vector< T, Dim > > | |
| COpenMD::MSMSFormat | |
| COpenMD::MultipoleAdapter | |
| COpenMD::MultipoleAtypeParameters | |
| COpenMD::NameFinder | |
| COpenMD::NEP | |
| COpenMD::NEPAtoms | |
| COpenMD::NonBondedInteraction | The basic interface for non-bonded interactions |
| COpenMD::ElectrostaticInteraction | The basic interface for electrostatic interactions |
| COpenMD::Electrostatic | |
| COpenMD::HydrogenBondingInteraction | The basic interface for hydrogen bonding interactions |
| COpenMD::Sticky | |
| COpenMD::MetallicInteraction | The basic interface for metallic interactions |
| COpenMD::EAM | |
| COpenMD::SC | |
| COpenMD::VanDerWaalsInteraction | The basic interface for van der Waals interactions |
| COpenMD::Buckingham | |
| COpenMD::GB | |
| COpenMD::InversePowerSeries | |
| COpenMD::LJ | |
| COpenMD::MAW | |
| COpenMD::Mie | |
| COpenMD::Morse | |
| COpenMD::RepulsivePower | |
| COpenMD::SHAPES | |
| COpenMD::NonBondedInteractionType | NonBondedInteractionType class is responsible for keeping track of static (unchanging) parameters for explicit non-bonded interactions |
| COpenMD::BuckinghamInteractionType | BuckinghamInteractionType is one of the basic non-bonded interactions for representing the non-Coulombic contribution in ionic and networked solids like silica and alumina |
| COpenMD::EAMInteractionType | EAMInteractionType is one of the basic metallic interactions for representing the bonding in metallic solids |
| COpenMD::InversePowerSeriesInteractionType | InversePowerSeriesInteractionType is a sum of powers in the inverse of r: |
| COpenMD::LennardJonesInteractionType | LennardJonesInteractionType is one of the basic interaction types |
| COpenMD::MAWInteractionType | MAWInteractionType (Metal-Angular-Water) is one of the basic Metal-to-NonMetal interaction types |
| COpenMD::MieInteractionType | MieInteractionType is one of the basic interaction types |
| COpenMD::MorseInteractionType | MorseInteractionType is one of the basic non-bonded interactions |
| COpenMD::RepulsivePowerInteractionType | RepulsivePowerInteractionType is one of the basic interaction types |
| COpenMD::NonBondedInteractionTypeProperties | |
| CQuantLib::ObjectiveFunction | Objective function abstract class for optimization problem |
| COpenMD::BoxObjectiveFunction | |
| COpenMD::FluctuatingChargeObjectiveFunction | |
| COpenMD::PotentialEnergyObjectiveFunction | |
| COpenMD::OpenMDBitSet | OpenMDBitSet is a wrapper class of std::vector<bool> to act as a growable std::bitset |
| COpenMD::OptimizationCreator | |
| COpenMD::OptimizationBuilder< ConcreteOptimization > | |
| COpenMD::OptimizationFactory | Factory pattern and Singleton Pattern are used to define an interface for creating an Optimization |
| CQuantLib::OptimizationMethod | Abstract class for constrained optimization method |
| CQuantLib::LineSearchBasedMethod | |
| CQuantLib::BFGS | Broyden-Fletcher-Goldfarb-Shanno algorithm |
| CQuantLib::ConjugateGradient | Multi-dimensional Conjugate Gradient class |
| CQuantLib::SteepestDescent | Multi-dimensional steepest-descent class |
| COpenMD::StaticAnalyser::OutputData | |
| COpenMD::PairList | PairList class maintains a general purpose list of atom pairs using the global indices of the atoms |
| COpenMD::ParamConstraintFacade< Derived > | This class allows to recognize constraint predicates, so that they can be combined using composition operators |
| COpenMD::ParamConstraintFacade< AndParamConstraint< Cons1T, Cons2T > > | |
| COpenMD::AndParamConstraint< Cons1T, Cons2T > | |
| COpenMD::ParamConstraintFacade< EqualConstraint< T > > | |
| COpenMD::EqualConstraint< T > | |
| COpenMD::ParamConstraintFacade< EqualIgnoreCaseConstraint > | |
| COpenMD::ContainsConstraint | |
| COpenMD::EqualIgnoreCaseConstraint | |
| COpenMD::ParamConstraintFacade< EvenConstraint > | |
| COpenMD::EvenConstraint | |
| COpenMD::ParamConstraintFacade< GreaterThanConstraint< T > > | |
| COpenMD::GreaterThanConstraint< T > | |
| COpenMD::ParamConstraintFacade< GreaterThanOrEqualTo< T > > | |
| COpenMD::GreaterThanOrEqualTo< T > | |
| COpenMD::ParamConstraintFacade< LessThanConstraint< T > > | |
| COpenMD::LessThanConstraint< T > | |
| COpenMD::ParamConstraintFacade< LessThanOrEqualToConstraint< T > > | |
| COpenMD::LessThanOrEqualToConstraint< T > | |
| COpenMD::ParamConstraintFacade< NegativeConstraint > | |
| COpenMD::NegativeConstraint | |
| COpenMD::ParamConstraintFacade< NonNegativeConstraint > | |
| COpenMD::NonNegativeConstraint | |
| COpenMD::ParamConstraintFacade< NonPositiveConstraint > | |
| COpenMD::NonPositiveConstraint | |
| COpenMD::ParamConstraintFacade< NonZeroConstraint > | |
| COpenMD::NonZeroConstraint | |
| COpenMD::ParamConstraintFacade< NotEmptyConstraint > | |
| COpenMD::NotEmptyConstraint | |
| COpenMD::ParamConstraintFacade< NotParamConstraint< ConsT > > | |
| COpenMD::NotParamConstraint< ConsT > | |
| COpenMD::ParamConstraintFacade< OrParamConstraint< Cons1T, Cons2T > > | |
| COpenMD::OrParamConstraint< Cons1T, Cons2T > | |
| COpenMD::ParamConstraintFacade< PositiveConstraint > | |
| COpenMD::PositiveConstraint | |
| COpenMD::ParamConstraintFacade< ZeroConstraint > | |
| COpenMD::ZeroConstraint | |
| CParameterBase | |
| CParameter< ParamType > | |
| CQuantLib::ParametersTransformation | |
| CParameterTraits< T > | |
| CParameterTraits< bool > | |
| CParameterTraits< int > | |
| CParameterTraits< RealType > | |
| CParameterTraits< std::pair< int, int > > | |
| CParameterTraits< std::string > | |
| CParameterTraits< std::vector< RealType > > | |
| CParameterTraits< unsigned long int > | |
| Cantlr4::Parser | |
| COMDParser | |
| Cantlr4::ParserRuleContext | |
| COMDParser::AssignmentContext | |
| COMDParser::AtomblockContext | |
| COMDParser::AtomstatementContext | |
| COMDParser::BendblockContext | |
| COMDParser::BendstatementContext | |
| COMDParser::BondblockContext | |
| COMDParser::BondstatementContext | |
| COMDParser::ComponentblockContext | |
| COMDParser::ConstantContext | |
| COMDParser::ConstraintblockContext | |
| COMDParser::ConstraintstatementContext | |
| COMDParser::CutoffgroupblockContext | |
| COMDParser::CutoffgroupstatementContext | |
| COMDParser::DoubleNumberContext | |
| COMDParser::DoubleNumberTupleContext | |
| COMDParser::FloatConstContext | |
| COMDParser::FlucqblockContext | |
| COMDParser::FragmentblockContext | |
| COMDParser::FragmentstatementContext | |
| COMDParser::IntConstContext | |
| COMDParser::InttupleContext | |
| COMDParser::InversionblockContext | |
| COMDParser::InversionstatementContext | |
| COMDParser::LightblockContext | |
| COMDParser::MinimizerblockContext | |
| COMDParser::MoleculeblockContext | |
| COMDParser::MoleculestatementContext | |
| COMDParser::NodesblockContext | |
| COMDParser::NodesstatementContext | |
| COMDParser::OmdfileContext | |
| COMDParser::RestraintblockContext | |
| COMDParser::RigidbodyblockContext | |
| COMDParser::RigidbodystatementContext | |
| COMDParser::RnemdblockContext | |
| COMDParser::SequencestringContext | |
| COMDParser::StatementContext | |
| COMDParser::TorsionblockContext | |
| COMDParser::TorsionstatementContext | |
| COMDParser::VectorConstContext | |
| COMDParser::VelocityfieldblockContext | |
| COMDParser::ZconstraintblockContext | |
| Cantlr4::tree::ParseTreeListener | |
| COMDListener | This interface defines an abstract listener for a parse tree produced by OMDParser |
| COMDBaseListener | This class provides an empty implementation of OMDListener, which can be extended to create a listener which only needs to handle a subset of the available methods |
| COpenMD::Plan< T > | |
| COpenMD::PolarizableAdapter | |
| COpenMD::PolarizableAtypeParameters | |
| COpenMD::Polynomial< Real > | A generic Polynomial class |
| CQuantLib::Problem | Constrained optimization problem |
| COpenMD::ProgressBar | |
| COpenMD::PropertyMap | PropertyMap class maintains a list of GenericData |
| CJAMA::QR< Real > | |
| COpenMD::Utils::RandNumGen | Minimize the interface for the standard library's Mersenne Twister PRNG while maintaining the UniformRandomBitGenerator named requirement |
| COpenMD::Rattle | Velocity Verlet Constraint Algorithm |
| COpenMD::RealSphericalHarmonic | |
| COpenMD::RealSymmetricTridiagonal< Real > | Computes eigenvalues and eigenvectors of a real (non-complex) symmetric tridiagonal matrix by the QL method |
| COpenMD::RectMatrix< Real, Row, Col > | Rectangular matrix class |
| COpenMD::SquareMatrix< RealType, 6 > | |
| COpenMD::RectMatrix< Real, Dim, Dim > | |
| COpenMD::SquareMatrix< Real, 3 > | |
| COpenMD::SquareMatrix3< Real > | |
| COpenMD::SquareMatrix< Real, Dim > | A square matrix class |
| COpenMD::SquareMatrix3< RealType > | |
| COpenMD::Restraint | |
| COpenMD::MolecularRestraint | MolecularRestraint is the restraint (both positional and orientational) for the configuration of a flexible Molecule relative to some reference structure for the same Molecule |
| COpenMD::ObjectRestraint | ObjectRestraint is the basic harmonic restraint for the degrees of freedom of a StuntDouble |
| COpenMD::RestReader | |
| COpenMD::RestWriter | |
| COpenMD::Revision | |
| COpenMD::RMSD | |
| COpenMD::RNEMD::RNEMD | |
| COpenMD::RNEMD::NIVSMethod | |
| COpenMD::RNEMD::SPFMethod | |
| COpenMD::RNEMD::SwapMethod | |
| COpenMD::RNEMD::VSSMethod | |
| COpenMD::RotationAlgorithm | Abstract class for rotation |
| COpenMD::DLM | |
| COpenMD::RPInteractionData | |
| COpenMD::RPYMobility | |
| COpenMD::SameSectionParserFunctor | |
| COpenMD::SCAtomData | |
| COpenMD::SCAtypeParameters | |
| COpenMD::SCDElem | |
| COpenMD::SCInteractionData | |
| COpenMD::SDShape | |
| COpenMD::SectionParser | |
| COpenMD::AtomTypesSectionParser | "io/AtomTypesSectionParser.hpp" |
| COpenMD::BaseAtomTypesSectionParser | "io/BaseAtomTypesSectionParser.hpp" |
| COpenMD::BendTypesSectionParser | "io/BendTypesSectionParser.hpp" |
| COpenMD::BondTypesSectionParser | "io/BondTypesSectionParser.hpp" |
| COpenMD::ChargeAtomTypesSectionParser | |
| COpenMD::DirectionalAtomTypesSectionParser | |
| COpenMD::EAMAtomTypesSectionParser | "io/EAMAtomTypesSectionParser.hpp" |
| COpenMD::FluctuatingChargeAtomTypesSectionParser | |
| COpenMD::GayBerneAtomTypesSectionParser | |
| COpenMD::InversionTypesSectionParser | "io/InversionTypesSectionParser.hpp" |
| COpenMD::LennardJonesAtomTypesSectionParser | |
| COpenMD::MultipoleAtomTypesSectionParser | |
| COpenMD::NonBondedInteractionsSectionParser | |
| COpenMD::OptionSectionParser | "io/OptionSectionParser.hpp" |
| COpenMD::PolarizableAtomTypesSectionParser | |
| COpenMD::SCAtomTypesSectionParser | "io/SCAtomTypesSectionParser.hpp" |
| COpenMD::ShapeAtomTypesSectionParser | |
| COpenMD::StickyAtomTypesSectionParser | "io/StickyAtomTypesSectionParser.hpp" |
| COpenMD::StickyPowerAtomTypesSectionParser | StickyPowerAtomTypesSectionParser.hpp "io/StickyAtomTypesSectionParser.hpp" |
| COpenMD::TorsionTypesSectionParser | "io/TorsionTypesSectionParser.hpp" |
| COpenMD::UFFAtomTypesSectionParser | |
| COpenMD::SectionParserContext | |
| COpenMD::SectionParserManager | "io/SectionParserManager.hpp" SectionParserManager maintains a priority list |
| COpenMD::SelectionCompiler | "selection/SelectionCompiler.hpp" |
| COpenMD::SelectionEvaluator | "selection/SelectionEvaluator" |
| COpenMD::SelectionManager | |
| COpenMD::SelectionSet | |
| COpenMD::SelfData | The SelfData struct |
| COpenMD::SequentialAnalyzer | "applications/sequentialProps/SequentialAnalyzer" |
| COpenMD::COMVel | |
| COpenMD::CenterOfMass | |
| COpenMD::ContactAngle1 | Calculates the contact angle of a droplet with a surface using a spherical cap approximation for the droplet |
| COpenMD::ContactAngle2 | |
| COpenMD::CountDifference | |
| COpenMD::Equipartition | |
| COpenMD::FluxOut | |
| COpenMD::GCNSeq | Generalized Coordinate Number Sequence |
| COpenMD::Qsurf | Tetrahedral order parameter Q field, output frame-by-frame as OpenDX volumetric data files |
| COpenMD::Shake | |
| COpenMD::Shape | |
| COpenMD::CompositeShape | Combine composite pattern and visitor pattern |
| COpenMD::Ellipsoid | An ellipsoid in OpenMD is restricted to having two equal equatorial semi-axes |
| COpenMD::Mesh | |
| COpenMD::Sphere | |
| COpenMD::ShapeAtomType | |
| COpenMD::ShapeBuilder | |
| COpenMD::shapedLattice | Returns a vector of vector3 position on a lattice truncated |
| COpenMD::shapedLatticeEllipsoid | Implements an ellipsoid-shaped lattice |
| COpenMD::shapedLatticePentRod | Implements a spherically-capped rod-shaped lattice |
| COpenMD::shapedLatticeRod | Implements a spherically-capped rod-shaped lattice |
| COpenMD::shapedLatticeSpherical | Implements a spherical lattice |
| COpenMD::ShortRangeInteraction | A ShortRangeInteraction holds some bookeeping data for bonded interactions (e.g |
| COpenMD::Bend | |
| COpenMD::GhostBend | |
| COpenMD::SDKBend | |
| COpenMD::UreyBradleyBend | |
| COpenMD::Bond | |
| COpenMD::Inversion | |
| COpenMD::Torsion | |
| COpenMD::GhostTorsion | |
| COpenMD::SimCreator | The only responsibility of SimCreator is to parse the meta-data file and create a SimInfo instance based on the information returned by parser |
| COpenMD::SimInfo | One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the current simulation |
| COpenMD::SimplePreprocessor | |
| CSimplePreprocessor | A simple preprocessor |
| COpenMD::Snapshot | Repository storing dynamic data during a Simulation |
| COpenMD::SnapshotManager | SnapshotManager class is an abstract class which maintains a series of snapshots |
| COpenMD::BlockSnapshotManager | |
| COpenMD::SimSnapshotManager | "brains/SimSnapshotManager.hpp" |
| COpenMD::SPFData | Storage specific to the SPF-RNEMD method that allows for a new simulation to pick up where an old one left off |
| COpenMD::SphericalHarmonic | |
| COpenMD::StaticAnalyser | |
| COpenMD::Field< RealType > | |
| COpenMD::ChargeField | |
| COpenMD::DensityField | |
| COpenMD::Field< Vector3d > | |
| COpenMD::DipoleField | |
| COpenMD::SDVelocityField | |
| COpenMD::AngleR | |
| COpenMD::AngleR | |
| COpenMD::BOPofR | |
| COpenMD::FCCOfR | |
| COpenMD::IcosahedralOfR | |
| COpenMD::BondAngleDistribution | BondAngleDistribution |
| COpenMD::BondOrderParameter | Bond Order Parameter |
| COpenMD::ChargeDensityZ | |
| COpenMD::ChargeHistogram | |
| COpenMD::ChargeR | |
| COpenMD::ChargeZ | |
| COpenMD::CoordinationNumber | CoordinationNumber |
| COpenMD::GCN | Generalized Coordinate Number |
| COpenMD::SCN | Secondary Coordinate Number |
| COpenMD::CurrentDensity | |
| COpenMD::DensityHistogram | |
| COpenMD::DensityPlot | |
| COpenMD::Field< T > | |
| COpenMD::HBondGeometric | Hydrogen Bonding statistics using geometric criteria |
| COpenMD::HBondR | Hydrogen Bonding density binned by r |
| COpenMD::HBondRvol | Hydrogen Bonding density binned by r |
| COpenMD::HBondZ | Hydrogen Bonding density binned by z |
| COpenMD::HBondZvol | Hydrogen Bonding density binned by z |
| COpenMD::Hxy | |
| COpenMD::MassDensityR | |
| COpenMD::MassDensityZ | |
| COpenMD::MomentumHistogram | |
| COpenMD::MultiComponentRDF | Multi-Component Radial Distribution Function |
| COpenMD::KirkwoodBuff | |
| COpenMD::MultipoleSum | |
| COpenMD::NanoLength | |
| COpenMD::NanoVolume | |
| COpenMD::NitrileFrequencyMap | |
| COpenMD::NumberR | |
| COpenMD::NumberZ | |
| COpenMD::OHFrequencyMap | |
| COpenMD::ObjectCount | |
| COpenMD::MoleculeCount | |
| COpenMD::OrderParameterProbZ | |
| COpenMD::P2OrderParameter | |
| COpenMD::P2R | |
| COpenMD::P2Z | |
| COpenMD::PipeDensity | |
| COpenMD::PositionZ | |
| COpenMD::PotDiff | Potential Energy differences with charges turned off |
| COpenMD::RadialDistrFunc | Radial Distribution Function |
| COpenMD::GofAngle2 | |
| COpenMD::GofR | |
| COpenMD::GofRAngle | |
| COpenMD::GofROmega | |
| COpenMD::GofRTheta | |
| COpenMD::GofRAngle2 | |
| COpenMD::GofRZ | |
| COpenMD::GofXyz | |
| COpenMD::GofZ | |
| COpenMD::Kirkwood | |
| COpenMD::KirkwoodQuadrupoles | |
| COpenMD::TranslationalOrderParamZ | TranslationalOrder ParameterZ |
| COpenMD::TwoDGofR | |
| COpenMD::RhoR | |
| COpenMD::RhoZ | |
| COpenMD::RippleOP | |
| COpenMD::SCDOrderParameter | |
| COpenMD::SFGTimeAvg | Computes vibrational SFG spectra in the OH-stretch region using the TIME-AVERAGING APPROXIMATION (TAA) of Auer & Skinner, rather than the dynamical adiabatic-propagator method implemented in the SFG dynamic property |
| COpenMD::SpatialStatistics | |
| COpenMD::ShellStatistics | |
| COpenMD::RNEMDR | |
| COpenMD::RNEMDRTheta | |
| COpenMD::SlabStatistics | |
| COpenMD::DipoleOrientation | |
| COpenMD::RNEMDZ | |
| COpenMD::SurfaceDiffusion | |
| COpenMD::TetrahedralityHBMatrix | Tetrahedrality Hydrogen Bonding Matrix |
| COpenMD::TetrahedralityParam | Tetrahedrality Parameter |
| COpenMD::TetrahedralityParamDens | Tetrahedrality ParameterDens |
| COpenMD::TetrahedralityParamR | Tetrahedrality ParameterR |
| COpenMD::TetrahedralityParamRAngle | Tetrahedrality ParameterRAngle |
| COpenMD::TetrahedralityParamXYZ | Tetrahedrality Parameter XYZ |
| COpenMD::TetrahedralityParamZ | Tetrahedrality ParameterZ |
| COpenMD::VelocityZ | |
| COpenMD::pAngle | |
| COpenMD::Stats | |
| COpenMD::Stats::StatsData | |
| COpenMD::StatusFunction | |
| COpenMD::DumpStatusFunction | |
| COpenMD::NoStatus | No status |
| COpenMD::StatWriter | A configurable Statistics Writer |
| COpenMD::StickyAdapter | |
| COpenMD::StickyAtypeParameters | |
| COpenMD::StickyInteractionData | |
| CSTLContainerTypeData | STL container type generic data which is associated with an id |
| Cstd::streambuf | |
| COpenMD::gzstreambuf | |
| COpenMD::StringTokenizer | The string tokenizer class allows an application to break a string into tokens The set of delimiters (the characters that separate tokens) may be specified either at creation time or on a per-token basis |
| COpenMD::StuntDouble | "Don't move, or you're dead! Stand up! Captain, we've got them!" |
| COpenMD::Atom | |
| COpenMD::DirectionalAtom | |
| COpenMD::RigidBody | |
| COpenMD::SuttonChenAdapter | |
| CJAMA::SVD< Real > | Singular Value Decomposition |
| COpenMD::SwitchingFunction | |
| COpenMD::SystemDecomposition | SystemDecomposition is an interface for passing out and collecting information from many processors for use during integration and computation of physical properties |
| COpenMD::Thermo | |
| COpenMD::Token | |
| COpenMD::TokenMap | |
| COpenMD::TorsionData | |
| COpenMD::TorsionDataSet | |
| COpenMD::TorsionType | |
| COpenMD::CharmmTorsionType | "types/CharmmTorsionType.hpp" These torsion types are defined identically with functional form given in the following paper: |
| COpenMD::CubicTorsionType | |
| COpenMD::HarmonicTorsionType | These torsion types are defined identically with functional form given in equation 5 in the following paper: |
| COpenMD::PolynomialTorsionType | "types/PolynomialTorsionType.hpp" |
| COpenMD::OplsTorsionType | These torsion types are defined identically with functional form given in the following paper: |
| COpenMD::TrappeTorsionType | "types/TrappeTorsionType.hpp" These torsion types are defined identically with functional form given in the following paper: |
| COpenMD::QuarticTorsionType | |
| COpenMD::TorsionTypeParser | "types/TorsionTypeParser.hpp" |
| COpenMD::TreeNode | |
| COpenMD::Triangle | Triangle provides geometric data to OpenMD |
| COpenMD::TriangleQuadrature< NumericReturnType, T > | A class for integrating a function using numerical quadrature over triangular domains |
| COpenMD::TriangleQuadratureRule | A "rule" (weights and quadrature points) for computing quadrature over triangular domains |
| COpenMD::GaussianTriangleQuadratureRule | |
| COpenMD::StrangFixCowperTriangleQuadratureRule | |
| Cstd::true_type | |
| COpenMD::Utils::details::is_container< T, std::void_t< typename T::value_type, typename T::reference, typename T::const_reference, typename T::iterator, typename T::const_iterator, typename T::difference_type, typename T::size_type, decltype(std::declval< T >().begin()), decltype(std::declval< T >().end()), decltype(std::declval< T >().cbegin()), decltype(std::declval< T >().cend()), decltype(std::declval< T >().max_size()), decltype(std::declval< T >().empty())> > | |
| COpenMD::TypeContainer< ElemType, SIZE > | |
| COpenMD::UFFAdapter | |
| COpenMD::UFFAtypeParameters | |
| COpenMD::Vector< Real, Dim > | Fix length vector class |
| COpenMD::Vector2< int > | |
| COpenMD::Vector2< RealType > | |
| COpenMD::Vector3< int > | |
| COpenMD::Vector3< RealType > | |
| COpenMD::Vector< Real, 2 > | |
| COpenMD::Vector2< Real > | |
| COpenMD::Vector< Real, 3 > | |
| COpenMD::Vector3< Real > | |
| COpenMD::Vector< Real, 4 > | |
| COpenMD::Quaternion< Real > | Quaternion is a sort of a higher-level complex number |
| COpenMD::Vector< Real, 6 > | |
| COpenMD::Vector< RealType, 4 > | |
| COpenMD::Quaternion< RealType > | |
| COpenMD::Velocitizer | Velocity-modifying routines |
| COpenMD::VelocityField | A linear (homogeneous) ambient velocity field, v(r) = v0 + K . r |
| CWildcard | |
| COpenMD::XYZAtom | |
| COpenMD::XYZFormat | |
| COpenMD::ZconsData | |
| COpenMD::ZConsReader | |
| COpenMD::ZconstraintMol | |
| COpenMD::ZconstraintParam | |
| COpenMD::ZConsWriter | |
| COpenMD::ZhouParameters | |
1.17.0